BAC Information

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BAC

Clone NameMSMg01-055K24
Chromosome14 (Build37)
Map Location 71,832,167 - 71,832,647
singlet/doubletsinglet
Overlap genenone
Upstream genePolr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477, LOC668482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055K24.T7 (MSMg01no055_k24.b1)MSMg01-055K24.TJ (MSMg01no055_k24.g1)
ACCAG283289AG283290
length695905
length of high quality
(start - end)
486 (45 - 530)---
definitionCHROMAT_FILE: MSMg01no055_k24.b1 PHD_FILE: MSMg01no055_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:09 2005CHROMAT_FILE: MSMg01no055_k24.g1 PHD_FILE: MSMg01no055_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCACCCACATCCTCCATATGACCAAGCTGTCCATTGTCCTGTAATGC
TTTGGCAGGGGCTATAGCAGAGGACCATTTAGCTTCTTTGTTCCATAAAT
ATCACTGTGGTTTCCATTGGATTAGAATGGAAAGAGCTGAGAAATGGAAA
CCTCCATGCTACCCAGATTTGCAGGAAGGCACTCTGGTTTAGGGGAAAGA
CATGACCACCAAGGAGGAAGAAGGATGCAAACACTAAGGAATGCGAAGGC
ACTTTGCCCTGGGTAGTGAGAGACAGATGTCAGGAGCAGCACACAGGCAT
GCTGAGAAGGATTGCTCCTGTACCACGTGGCACAGAAACATGGGCCATAT
TTCAGAAGGAAATAAAAATGTGTCTGTAATTAATGATCCTCTAGAAACAC
ATGGCCCTTATTAATGTAGCAATTTGGAGAAACATAATTCACTAAACATT
GGGCTTGAATTGCAGAATGCTTTTGCAGCTAGAGGAGGATACAGGAAAAA
GCAGAGTCACCCATGATGGCTTCCCAAGGATTCTAAGGACAGGGCACTGG
GAGGGACAGGGACAGGGACAGAGCTGGGTCACCCACACTGAACAGCTGAT
GTGCTTATGGGGAGGCGACCGTGTTCTTTCCATTCCTAGGAACTC
TTCCCCCTTTCCCCCCTTCCTCTCTTTTTTTCTTTCTTTTTTCTTTCCCA
ATGATAGTGTGTAGGCCTCGCGGTCGCCTGTTTCCAACAATTAATTTGAC
ACTATACAATTACCCGCGTAATCCCCATTTTGGGGTCTCTCAACATCTCC
CTCAACAGCACCATGTTATAAAATTTGACACACCCACATCTTTCATCTGC
TATTCCCAACCACTATTATGACGTGTTGCCACAAGCATTGTTGTGTCATC
TACCCTTTCCTCCTGATTTTCCCTTGTCTCAGCTGTCACATATAACCCGC
GCTCGTCCTATAATACGCCCTGCCTTTCATCCTGTATACATATCCACTGT
TCATTCTACACCCTCCCTGTTATTTACCTGACTTGAATGCTTGATACTCC
CTCTTCTTATTTCTACGTTTTGACCATACCCCACCGCTTCTTTTTTTCAC
CACAACCCCATTTCTCCTTTTCCCCTTTTTCTTTTCCCCTCCTACGGCTT
CTCGCTTTCCTACTCCCCCCCCCAATTCTTCTTTTACCTTTTCCTCCCCA
CCATTTCTCCTGTTGCTCACGCCCCCCTTTTTGCCCTTCTCCCTCCCCTT
CTTCCCTTTTCCATTATTTCTCCTCCCCCTTCTCCTTTTCTGCCCTCCCC
GCTCTCTTTCCTTTTTTTTTTTTTCCCCCCCCCCACCACCACTTTTTTTT
ATTTTTCCCCCCATTTTCCCGTAACCCCTCTCCACTCTCCCACTCCCCTT
ATTCCCTATCATGCCACCCCAACCCCTGTAACAACTTCTCTCTTTTCTAC
TTTTTGCTTACCATTTTACCCCCCACCAACCACCCGTTTTCATCCTTCTC
CTTTGCATCCGCTTTCTTATCCTTCTCCCCCGCTTCACCTTCTTACCCTC
CTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_k24.b1 MSMg01no055_k24.b1 CHROMAT_FILE:
MSMg01no055_k24.b1 PHD_FILE: MSMg01no055_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:09 2005
         (486 letters)



>mm_chr14_71831962_71832847
          Length = 886

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacccacatcctccatatgaccaagctgtccattgtcctgtaatgctttggcagg 65
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaattcacccacatcctgaatatgaccaagctgtccattgtcctgtaatgctttggcagg 627

                                                                       
Query: 66  ggctatagcagaggaccatttagcttctttgttccataaatatcactgtggtttccattg 125
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggctgtagcagaggatcatttagcttctttgttccataaatatcactgtggtttccattg 567

                                                                       
Query: 126 gattagaatggaaagagctgagaaatggaaacctccatgctacccagatttgcaggaagg 185
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 566 gattagaatggaaagagctgagaaatggagacctccatgctacccagatttgcaggaagg 507

                                                                       
Query: 186 cactctggtttaggggaaagacatgaccaccaaggaggaagaaggatgcaaacactaagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cactctggtttaggggaaagacatgaccaccaaggaggaagaaggatgcaaacactaagg 447

                                                                       
Query: 246 aatgcgaaggcactttgccctgggtagtgagagacagatgtcaggagcagcacacaggca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatgcgaaggcactttgccctgggtagtgagagacagatgtcaggagcagcacacaggca 387

                                                                       
Query: 306 tgctgagaaggattgctcctgtaccacgtggcacagaaacatgggccatatttcagaagg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgctgagaaggattgctcctgtaccacgtggcacagaaacatgggccatatttcagaagg 327

                                                                       
Query: 366 aaataaaaatgtgtctgtaattaatgatcctctagaaacacatggcccttattaatgtag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaataaaaatgtgtctgtaattaatgatcctctagaaacacatggcccttattaatgtag 267

                                                                       
Query: 426 caatttggagaaacataattcactaaacattgggcttgaattgcagaatgcttttgcagc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caatttggagaaacataattcactaaacattgggcttgaattgcagaatgcttttgcagc 207

            
Query: 486 t 486
           |
Sbjct: 206 t 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)