BAC Information

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BAC

Clone NameMSMg01-055L08
Chromosome14 (Build37)
Map Location 110,974,401 - 110,974,545
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055L08.T7 (MSMg01no055_l08.b1)MSMg01-055L08.TJ (MSMg01no055_l08.g1)
ACCAG283305AG283306
length1,394721
length of high quality
(start - end)
---145 (56 - 200)
definitionCHROMAT_FILE: MSMg01no055_l08.b1 PHD_FILE: MSMg01no055_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:11 2005CHROMAT_FILE: MSMg01no055_l08.g1 PHD_FILE: MSMg01no055_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCCTCACATCTCACACNACACACATCTTANTCCTCTTCTTCCGCTGA
CTCTCAGGGCCAGAAAGACTGGGACACACACCCNGCGATCCGCAATCCCC
GGCTTCTCGCTCGCTCCTTCATATTCTGACTCCCAACCCCGCAATTATAA
CTCGCCTCTCACACAANTCCCACCCCACATCACCNTTATACTATCTCCAC
ACCCCTCACTTATTCCTCTCCNTCACGCCGCGCTGTATATGCTCACCCCA
AGCGAATTAATGTATATAGAACCAATATGATAATTGAGGATAATAACGTG
CGCTACGAGAAGCGAGGNCAGAGAGAAAGGGAATATTGGACGNAGCGCGC
CATGCCAGCACTTCATTATTCTAGTCTTTTATTAAGTTATTAAAATATTG
CTTNTATTATCGGAGTTTAATAAGACTATAGAGCTCAGGGCCGGNGTGTG
TATCCGGTCGGAGGTTAACATATGCATCCATATAGGTCAGCGACGCGGCG
CCTCCTCACGCCGCGTCCGCGAGGAGCCGCGCCGGCGCCGTGCTGTGTGG
GGGGAGCCGTCGCCTTGTCCCGCGGCCTTATGCGGAGAAAGATGTGCTCG
TCTATTACGTCGTGTTTACTCGTAATGCTGGATAGCGCTGCCGAGCATTG
TTTAGAAGCCCGCCCGCCCCGCGCTCCGACCACTCCGCTCCGCGTCAGGC
GCGGTCGCAGTTTAGTACATAACGACCTGCCACCGCTAGTTGAATGAGGT
ACCCCCGCCTAAGTAGCCCCTGTTACACTCCACGCCCTCACGCCGCCCCT
TATATGTAGTGACACGTATCGAGGTAGAGTGTATCTAATGTGCGGCGGAT
CGCGACGCGGATGCGCACGCAATCACGTGAGAGTAAGAAGACTATCTGAG
CCACCATAGCTCTACGAATAGACTCGACGTACTCCGCTCAGTATACACAG
TTCCGCTGAGCGATGGGTAGAGTGAAGGAGAGTAGATAGATAGTAGTACA
GTTGACATAAGGAACGCGGAAGATCATACTACTACTCTCGACTCGTNCTC
TCTGCGCTNTCTATCCACACTCTACTTACGGGTCTCGTATGATGTGTGAC
CAGCGCGCTCTCATCTTACTATACATCTACATCCGCGTTCTCATGATCTG
TACGGATGTCACACACCTACACATATTATATTATATAGTCGCGCGCGACT
CAGAGCACACAATATATGTATCGATTGTGTAGGGGCGCGACGCGCTCATA
CTCTGTGTGTGTNGTGTATCACGCTCGCCCACAGTCACTATTCGCTCGCC
GCCGCCACTATGCGATATCGTCGTCGNCCGTCCGACGACATCGTCTNACA
GACCCACATGTGATGAGGAGAGAGGATGGCACGAGTCGAGAAGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGCCAGCGAGATACTAGCTCGGGCGATATTAAAATATCATGGTT
TGGGAGGATATAGCCCTTAGGGGAGAGCCTACTGGTGCTGTTTTCAAATT
AAGCTTTAGTTGGCTTTACATTACTGACAGAAGGAGGATAGTATTGACAA
TGATCATGAAACATGAATGATGACCCCCAGAGCTGCATCTTACATCTCAA
TGTTGGAAATTTGGACTTGTATATTTATTTAGCCAGCAATTTATAACTTC
ATTTTTCTTTTTCTTTCTACTTTCTTATATTACCATCGTCTGTCTTAACC
TAGCTATACGATTTTATTGGCTGACATATGTAATGGTCATTATCATTTCC
TAACAGTTTTTTCTTACCACATCTCTGGTTAACATTCTTTACGAATAACA
TCTTGCTTTCTCCCCTTATGTAGAACTTGCCAATCATTAACTGTGTCGCC
ATACTTATCCTTGCTAAAACCTTGTTTATTGCTCCTTCCTGCCCCATTTG
CACTCCCGGTGAATATTATGCCCAATATGAGTTCTCCACCCCTCTGTCCT
CTTCTTTCCCAGCACACTTGACGCGTTTATTCATTTCCAGGTATCCGCTC
ATTTTCCACCCACCCCGATTATCCAGTCTTCCCCTTCTTCCCTATCCTTG
CCCTTTTTTTTACTCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_l08.g1 MSMg01no055_l08.g1 CHROMAT_FILE:
MSMg01no055_l08.g1 PHD_FILE: MSMg01no055_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:11 2005
         (145 letters)



>mm_chr14_110974201_110974745
          Length = 545

 Score =  257 bits (133), Expect = 2e-73
 Identities = 142/145 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccagcgagatactagctcgggcgatattaaaatatcatggtttgggaggatatagcc 60
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 201 ttgccagcgagatactagctcgggcgagattaaaatatcatggttggggaggatatagcc 260

                                                                       
Query: 61  cttaggggagagcctactggtgctgttttcaaattaagctttagttggctttacattact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cttaggggagagcctactggtgctgttttcaaattaagctttagttggctttacattaat 320

                                    
Query: 121 gacagaaggaggatagtattgacaa 145
           |||||||||||||||||||||||||
Sbjct: 321 gacagaaggaggatagtattgacaa 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)