BAC Information

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BAC

Clone NameMSMg01-056H13
Chromosome14 (Build37)
Map Location 99,044,340 - 99,128,036
singlet/doubletdoublet
Overlap geneLOC619716
Upstream geneEG668659, Dach1, LOC635593
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H13.T7 (MSMg01no056_h13.b1)MSMg01-056H13.TJ (MSMg01no056_h13.g1)
ACCAG283874AG283875
length714705
length of high quality
(start - end)
385 (76 - 460)290 (67 - 356)
definitionCHROMAT_FILE: MSMg01no056_h13.b1 PHD_FILE: MSMg01no056_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:09 2005CHROMAT_FILE: MSMg01no056_h13.g1 PHD_FILE: MSMg01no056_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,044,340 - 99,044,724)(99,127,748 - 99,128,036)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCCTCTTCCTAAAATAAGGAGATTCTCCACAATCATGTAGATAG
AAGATGCTATAAACATATCACACAAAAATATAGTGTAAGGTCTCACTCAT
ACAGATTATTGATTAAGAGAAAGAGATAATACGATCAACTAGCTTACAGG
TTCTATATCCCTGATTTTAAATTATGTGAAAATGAGATCCTCTGACAGGA
AATGTTTTAAAGTAGATACAGAAGAAAATCAGTAACTTTAAAGTGGCGTT
GGCAAGAGAAACATATGTTCTTCCTAGAGAGGATGACCAAAAGGAGAAAG
GAGTGTTTCTTGATCTCTCGCATTACCTGCCAAGGATTGCAACACTCATT
GGCTTCAGGTTCATTCCAACCCTGCTTCTAACTAGAGTTCACACTGACCT
CAGTGACACAGCAGGACAATGAGGGCCTTATACTGTGGTACTCACTGCAC
ACTTAATAATTCCTAGAGGGAAACAAGGACCTAAAGAATGGACTGGAGGT
GGGGAAGACCATCTCTTTCCTGAACTGCGTTTTGGCTGTTCAATTCTTGA
ATTCACACGGGCATAACAGAAATTTCCACTACCTCCGTAACTTCTCTATT
CAGCCTAGAGCTGCCGAAACTCATTGAACTATATGGTACCAAGATTGACC
GTTAAGTGGCTCCA
TGAAGTGCGAGGCCTGGCGGCCGCCTGTTTGCAGAGAGGAGGTGAACTAT
AGAAGTTCCGCGAAATTCCCTGGCTTTCTTCTGTACTTAGTATAAGAGCT
TCATGATACATGAGAGACATTTCCATTATTCCTGAAGAAAAAAAACCCAT
AGTTTTCTCTAAAGACATGCGGCATCAAGAAGAATGACCAAGCAAGCCTT
GCTAGGTTCTCTACTTTATTACCTGAGGTCAGGGTCTCTTTATCCTAGAA
CATTTCTCCAAAACTCAGTTTTCAAACAAGCTACTATTGAAGCTCTCATG
TTGTATTGTGTCTTTTTTTTTTTATTTCTGTATGAAGATTCACATGAAAT
CATAATTTTTCTTGCCCTGCCCTCCGCACGCTGTTTTCTTGCTAACCTAT
TGTTATTAACCTGTTATTGTTATTGCTAACCTATTATTGTTATTATTATA
ATGATAATGAACTTAAAATGGGAAGAAGGAAAATGTATGTTTGAAACAGC
AAATTATAACTGTATATATACTCACATATACACATACCCCTAATGTTTGA
AGTTAATACAACAATACTTAAAAAATATTTAAGAAATAATGCTTTAATCT
GCATACTTGTATTCAGCTAATGACTTGACCAAAACAAAATTGTTACAAGG
ATTTGGAAAGTTTTTGCTTCTCTTTGAAGGCTCCAGATTCGCCCCCGGCG
CTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h13.b1 MSMg01no056_h13.b1 CHROMAT_FILE:
MSMg01no056_h13.b1 PHD_FILE: MSMg01no056_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:09 2005
         (385 letters)



>mm_chr14_99044140_99044924
          Length = 785

 Score =  721 bits (373), Expect = 0.0
 Identities = 382/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattctccacaatcatgtagatagaagatgctataaacatatcacacaaaaatatagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 agattctccacaatcatgtagatagaagatgctataaacatatcagaaaaaaatatagtg 260

                                                                       
Query: 61  taaggtctcactcatacagattattgattaagagaaagagataatacgatcaactagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggtctcactcatacagattattgattaagagaaagagataatacgatcaactagctt 320

                                                                       
Query: 121 acaggttctatatccctgattttaaattatgtgaaaatgagatcctctgacaggaaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggttctatatccctgattttaaattatgtgaaaatgagatcctctgacaggaaatgt 380

                                                                       
Query: 181 tttaaagtagatacagaagaaaatcagtaactttaaagtggcgttggcaagagaaacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaagtagatacagaagaaaatcagtaactttaaagtggcgttggcaagagaaacata 440

                                                                       
Query: 241 tgttcttcctagagaggatgaccaaaaggagaaaggagtgtttcttgatctctcgcatta 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgttcttcctagagaggatgaccaaaaggagaaaggagtgtttcttgaactctcgcatta 500

                                                                       
Query: 301 cctgccaaggattgcaacactcattggcttcaggttcattccaaccctgcttctaactag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgccaaggattgcaacactcattggcttcaggttcattccaaccctgcttctaactag 560

                                    
Query: 361 agttcacactgacctcagtgacaca 385
           |||||||||||||||||||||||||
Sbjct: 561 agttcacactgacctcagtgacaca 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no056_h13.g1 MSMg01no056_h13.g1 CHROMAT_FILE:
MSMg01no056_h13.g1 PHD_FILE: MSMg01no056_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:09 2005
         (290 letters)



>mm_chr14_99127548_99128237
          Length = 690

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctggctttcttctgtacttagtataagagcttcatgatacatgagagacatttccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tccctggctttcttctgtacttagtataagagcttcatgatacatgagagacatttccat 430

                                                                       
Query: 61  tattcctgaagaaaaaaaacccatagttttctctaaagacatgcggcatcaagaagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tattcctgaagaaaaaaaacccatagttttctctaaagacatgcggcatcaagaagaatg 370

                                                                       
Query: 121 accaagcaagccttgctaggttctctactttattacctgaggtcagggtctctttatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 accaagcaagccttgctaggttctctactttattacctgaggtcagggtctctttatcct 310

                                                                       
Query: 181 agaacatttctccaaaactcagttttcaaacaagctactattgaagctctcatgttgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agaacatttctccaaaactcagttttcaaacaagctactattgaagctctcatgttgtat 250

                                                            
Query: 241 tgtgtctttttttttttatttctgtatgaagattcacatgaaatcataa 289
           |||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtgtctttgggtttttatttctgtatgaagattcacatgaaatcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)