BAC Information

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BAC

Clone NameMSMg01-057C07
Chromosome14 (Build37)
Map Location 81,411,367 - 81,411,701
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057C07.T7 (MSMg01no057_c07.b1)MSMg01-057C07.TJ (MSMg01no057_c07.g1)
ACCAG284375AG284376
length686681
length of high quality
(start - end)
493 (44 - 536)334 (77 - 410)
definitionCHROMAT_FILE: MSMg01no057_c07.b1 PHD_FILE: MSMg01no057_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:59 2005CHROMAT_FILE: MSMg01no057_c07.g1 PHD_FILE: MSMg01no057_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCATAATTTGCGGCGCTATACGACTCCTATTCAAAGAGGACCGCGGA
ATTCCATTGTATTCAACACTTTTTTTTTTCCAGAAGGTCTCAGTGAATCA
AAGATAGACTGTGGGACCGAGAAAGGTAGCTTGGTCCCAGGTTGAGATTA
GGCTCAAAGCCCTGGAGACCCTGAAGGGATGGTAGGTGCTTTGCCTGTCC
CCTGGCACCAATCCGCCGTCACTAGCCGCAACCCCCCATAGATTTGTGGT
CATTTTTCATGTAAGGGCAATGCCTCAAGCCCTTCCACTTATAGAGGATG
TGACCTGTGGTCAAGTAGGCTCAAGACAGAGCTCCATTTTAATGAGGCAC
CTAAAGGCCTGGAGGTGCATATAATCTTAGCCAATAAACTTTCCTTCCCA
GACATTCCTCCCTGCACAAGGTATATCTCAGGCTCACCCTGAGAAGTGGC
GTTTGGTTTTATTCATCCTATTTATGCCATGACAATAAATGCCTTAAAAC
CATGGACTACCTCTTTTCATTGGAATCCACTCTGGGGAGCCATGGAGAAG
GCCTTCACCTACAGAACTTCCTTCTAATCTCTCATAGAAGGTCTCTCTGT
GCTCCCAGCCATGGCAGCCATCAAGCTCAAGCCCTCCCACATCCTCAAGC
CAAGAACTCTCTCTTATGAGGATACAGCTGAAGCTC
CCCGATGATAGGNTAGGCTGGAGGCGCCTGTTCTCAAGCGGGGGTGACCT
ATAGAATTTCCAGAAAAATCTTAATGATAAACACGCTGAATGATGAAAAT
AACCACAAAGCTGTGGCCATAAGTAAACTGTCAGGATAATTATGAGTGAA
AATAAAGAGATTCTCCTTAACACAATGTTCTAATTTAATTTTAGCTTAAA
TTAATTTTTAAATTTTTAATTTGGAAGAAAAATCTATTATTCCCTCCATT
TCTTTTGTAGTTTTAAATACTTGCTCTGTAAACGGGCTCAGATATCTTTT
TCAAGATTTTGAATTTTTGCTGGAGGTGATCCTTCTCTATTTTTTCCTTG
CTGCTCTATCAGCTATTGGTTTATTACGCTGTCACTTTGTTAAGTATCAT
TACTTGACTTCTATTAAATATAAATAACGAATCAGGTGTTGACAAACTAT
ATTAATTTTTCTGCAGGCATCTTAGTCGTCTTCCCTTTTTTGTATGTGAT
CCAATTTCCAGGTCTTCATCTCTTACATGGCTATCACCCTAATATCTCTG
TTTCTACTTTATATTCCAGTTGTCATAACCAAGTTTCCATTTAAAATATA
CGCACCCCCTTTAACCCAATTTTCTTATTTCTGGCTCCTTGAGCGAAAAC
ACCTTTATCTTAAACGTTTCGAACGTTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_c07.g1 MSMg01no057_c07.g1 CHROMAT_FILE:
MSMg01no057_c07.g1 PHD_FILE: MSMg01no057_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:59 2005
         (334 letters)



>mm_chr14_81411021_81411755
          Length = 735

 Score =  571 bits (295), Expect = e-167
 Identities = 325/335 (97%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaacacgctgaatgatgaaaataaccacaaagctgtggccataagtaaactgtcagga 60
           |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 681 ataaacacactgaatgatgaaaataaccacaaagctgtgggtataagtaaactgtcagga 622

                                                                       
Query: 61  taattatgagtgaaaataaagagattctccttaacacaatgttctaatttaattttagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taattatgagtgaaaataaagagattctccttaacacaatgttctaatttaattttagct 562

                                                                       
Query: 121 taaattaatttttaaatttttaatttggaagaaaaatctattattccctccatttctttt 180
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacttactttttaaatttttaatttggaagaaaaatctattattccctccatttctttt 502

                                                                       
Query: 181 gtagttttaaatacttgctctgtaaacgggctcagatatctttttcaagattttgaattt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 501 gtagttttaaatacttgctctgtaaacgggctcagatatctttttcaagattttgaaaaa 442

                                                                       
Query: 241 ttgctggaggtgatccttctcta-ttttttccttgctgctctatcagctattggtttatt 299
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctggaggtgatccttctctatttttttccttgctgctctatcagctattggtttatt 382

                                              
Query: 300 acgctgtcactttgttaagtatcattacttgactt 334
           ||||||||||||||||||||| |||||||||||||
Sbjct: 381 acgctgtcactttgttaagtaccattacttgactt 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 735
Length adjustment: 9
Effective length of query: 325
Effective length of database: 726
Effective search space:   235950
Effective search space used:   235950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)