BAC Information

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BAC

Clone NameMSMg01-057D06
Chromosome14 (Build37)
Map Location 68,924,656 - 68,924,885
singlet/doubletsinglet
Overlap genenone
Upstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057D06.T7 (MSMg01no057_d06.b1)MSMg01-057D06.TJ (MSMg01no057_d06.g1)
ACCAG284418AG284419
length771721
length of high quality
(start - end)
230 (135 - 364)84 (107 - 190)
definitionCHROMAT_FILE: MSMg01no057_d06.b1 PHD_FILE: MSMg01no057_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:04 2005CHROMAT_FILE: MSMg01no057_d06.g1 PHD_FILE: MSMg01no057_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTTNNNNNNNNNNNNNTTTTTTTTTNNCCTTTCTTTCTCCTTCT
TTATTCTTTACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCC
AGGATCCGCGGAATTCTACACACTGTACTCTGAAGCATAAGGTTTCCAGT
CTATCTGGTAATAACATAAAGTATTCCAGATAATCACCTATTTGTGATAT
CTCTAATCTTCAAATGGTTCTTTGTTCTGGCCTTGGCAATATCACCCATA
CACGTACTTGAAAGATCAATCCCTAGCATTCCCTCTCCATAGATCTCTGT
GTCTCCCAGCATGGCGCCTCTTTTTTTGAAGTACGATCTGAGTTATCTGG
TTGTTTACTCTCCTCAGATTAAACTCTCTGCCCTGCATTCAGAGTGTCTG
GCTCTTCTGCGGACTTTTGCTGAATCCTTAGTCTCTGCACGGTTTAGTTG
ATTTGAACTCGCTCTGCTTAACTTGTAATAGCCCCTGTGAGCTTTACACG
TCCACAACAATATATATTTTGCAGATTCCATGAATCTGATCCTAATGAAA
CGGAAAGACTATCGGATCCTATGGCTGCCTTATGCCCTCCCTCTGTCTTA
CCATGCTGGGTTTTAACCCTTTACTGCTCCTCTGTGTCTCTTTCTGCGGA
GATTTTCTGTTACCCTAATTTCTTCAGCTTTGATTCCCTTAGTAACCACA
TATACCTATGATCCTCTCAACTTTTCATTATCCGAAAAACTTTTTTTTCC
ACTCCTTAACTGTTTTATAAA
TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAAAGCTGTCTGCACACAGTGCCTG
GCATTGAGAAAAGCAGACAACAGACCTTTCTCTCTCTCTTTCAGTTTTTG
TACTCAAATTCTAGAAATAAATGAACAGTCGATTACTACATAGAACACAC
AGGAACAGAAAGGTACGGTTGGCTCATTCATTGTTTTTTCCTCATCAAAG
AAAAAGAAATCATCTATTAAGACATTCACAGAACCACAGCACATATAAAG
AAACCCAATATTGTAGCCTCCAGCGGCTCTGGGTTACTGGGCTTCTAAAA
GGAAAGTCGGCTACGTACGTCAATCATGGAGAGAAATAACTAAGTTTTCT
GATTAACGCTCTATTTTAATCTCCGAGTCTTGTACTTTGAAACGCGAGAA
ACTCATCTTCCATTTTGCTTGGACCTCTTCACGAAAACAAGCTTACTCAT
CTCGCTCAGCCGGCAGTACTTTCTTGCATGAAACTGCCTAAACGTCTCCT
ACTATATATTCTTGCTCTCTCTCTTAATATTTCACTCTTACTCGCTCTTG
CTCAACTGTAGTCAACTCTTCATCCTGATTCTCCTCTGCATCTCGAATCT
AATACCTCTTTATAATACAACTCATTCCATGACCTTCGTTTAAATCCTCA
TTCCTCTTTTCTCTCTGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_d06.b1 MSMg01no057_d06.b1 CHROMAT_FILE:
MSMg01no057_d06.b1 PHD_FILE: MSMg01no057_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:04 2005
         (230 letters)



>mm_chr14_68924456_68925085
          Length = 630

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcataaggtttccagtctatctggtaataacataaagtattccagataatcacctatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcataaggtttccagtctatctggtaataacataaagtattccagataatcacctatttg 260

                                                                       
Query: 61  tgatatctctaatcttcaaatggttctttgttctggccttggcaatatcacccatacacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatctctaatcttcaaatggttctttgttctggccttggcaatatcacccatacacg 320

                                                                       
Query: 121 tacttgaaagatcaatccctagcattccctctccatagatctctgtgtctcccagcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttgaaagatcaatccctagcattccctctccatagatctctgtgtctcccagcatgg 380

                                                             
Query: 181 cgcctctttttttgaagtacgatctgagttatctggttgtttactctcct 230
           || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 cgtctctttttttgaagtaggatctgagttatctggttgtttactctcct 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)