BAC Information

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BAC

Clone NameMSMg01-058C15
Chromosome14 (Build37)
Map Location 65,132,658 - 65,132,894
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C15.T7 (MSMg01no058_c15.b1)MSMg01-058C15.TJ (MSMg01no058_c15.g1)
ACCAG285144AG285145
length712720
length of high quality
(start - end)
237 (64 - 300)76 (134 - 209)
definitionCHROMAT_FILE: MSMg01no058_c15.b1 PHD_FILE: MSMg01no058_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:21 2005CHROMAT_FILE: MSMg01no058_c15.g1 PHD_FILE: MSMg01no058_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATTGCAAAAAGAGGGGCGGAATTCTAGGT
CTTCCCCTGCTGGCACTTTTAGAGGAGGTTCTGGAAAACTAAGAAAGGGT
GAGGCCGAATTACCAAGGATCCAATATCCATCAGGGACAGTGGGGCTTCT
CTGAAGGACGTGGGCCACTGGGCTCTCTATGTGCCCAGTGATGCCAGTTC
CTTCCTCACTTGTAACTTCCTATTTTGGTTCTCTCTGCTTCCTGTCTGCC
AGAAGAACAGCCTCCTCCTCTACATATTCCTCCCACCGAAATGTTTTCGA
TCACCAGATTTATTCTATGGAGACAGGACTGCGGGTTGACACATCTGAAA
CTGTGAGCCAAAGAACATCTTCCTTTTAGTTGTCATATGAGTGTTTAGCT
GTGATTAAGGGAACGTGAACAACACAAGCACGGACAAATGACAGGAAATC
TAAAAATGGTACCTGGGACACAGGTGAGGGGGTCTGAATAACCTGATAGA
TTTCTGTCCGGTCTTCAAGATTGCCGAATACCGCACAGTGTGTTGTGAGT
GGCATCTAGTATATCAGTGATGGATGAATGGCTGTTTTACATATCCCCAG
ACTTTTCATCCTCCCGTTTTTCTGCACTGTACATACCAACTTCCACCATT
ATTGCTCTCCAGTCAGACCCCCTAATTATAATCTCCTTTCCCCACCCCAA
TTCTAACTACTG
NCCTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTATCCCAAAGACACTGATCT
TTATAAATACCCCTACATGCCACTCAAATGCAGCCTTTAACATGTAATTA
GCTATCTGCAATTCTTTATTAGCTCAGGGCTTTTTGTTTATTCACTTATT
TTTTTCGTTGGCAGTGGTTTTCTTGACATGGCATTTTACCCTGAAACCTA
CACTGGTACGAAAGGGGATCCTCCTTCTGTTCCTGTTCCGTACCTCCGGA
ACGCTGGTATTACCATATTGATATTCCTCACCCTTAGCTCATTATTTACC
AAACAAAACTCCCACCCCAATTCTGTCAACTGGCGCACAGACATCAAGAG
AGGTTTTTCACAGGCGCGTTTACAATGTGCCAGGTCTCACAGTCTACGAC
ACCCACCCCAATAACCAGCGAGGCTTGGAGAGCCTGAATGCTGGCTATCC
TAGAAAACCTTTTCCGGGTACGAAGAGAACGATCAATACGTAAAAGCAGT
TTACTCCAACCGATAATCTTTGACCCCCATACTCACCTAAAGCTTACTCT
GTTTGCACCATCATGCCACCCCTCCGCGCTCAGGGACGGGACTGCACTCT
CCTAAACATCGTGTACAAGTGCCTGATCGCCTCATGCTCTCGCCTCTGTT
TGTCCCTATTGACTCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c15.b1 MSMg01no058_c15.b1 CHROMAT_FILE:
MSMg01no058_c15.b1 PHD_FILE: MSMg01no058_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:21 2005
         (237 letters)



>mm_chr14_65132458_65133097
          Length = 640

 Score =  424 bits (219), Expect = e-123
 Identities = 232/237 (97%), Gaps = 3/237 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttttagaggaggttctggaaaactaagaaagggtgaggccgaattaccaaggatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacttttagaggaggttctggaaaactaagaaagggtgaggccgaattagcaaggatcca 260

                                                                       
Query: 61  atatccatcagggacagtggggcttctctgaaggacgtgggccactgggctctctatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatccatcagggacagtggggcttctctgaaggacgtgggccactgggctctctatgtg 320

                                                                       
Query: 121 cccagtgatgccagttccttcctcacttgtaacttcctattttggttctctctgcttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagtgatgccagttccttcctcacttgtaacttcctattttggttctctctgcttcct 380

                                                                    
Query: 181 gtctgccagaagaacagcctcctcctc-t--acatattcctcccaccgaaatgtttt 234
           ||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||
Sbjct: 381 gtctgccagaagaacagcctcctcctcctccacatattcctcccacggaaatgtttt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 640
Length adjustment: 9
Effective length of query: 228
Effective length of database: 631
Effective search space:   143868
Effective search space used:   143868
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)