BAC Information

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BAC

Clone NameMSMg01-058C17
Chromosome14 (Build37)
Map Location 74,282,653 - 74,453,407
singlet/doubletdoublet
Overlap geneEG629578
Upstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
Downstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C17.T7 (MSMg01no058_c17.b1)MSMg01-058C17.TJ (MSMg01no058_c17.g1)
ACCAG285148AG285149
length712721
length of high quality
(start - end)
437 (59 - 495)214 (73 - 286)
definitionCHROMAT_FILE: MSMg01no058_c17.b1 PHD_FILE: MSMg01no058_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:21 2005CHROMAT_FILE: MSMg01no058_c17.g1 PHD_FILE: MSMg01no058_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,282,653 - 74,283,089)(74,453,194 - 74,453,407)
sequence
GCGGCGCTAATACACTCCTATATTCAGAATATGGGCGGAATTCCTTACAC
TTCCGACTGACAGTAGATAACCAAACCCACACTAATTGGAATTTAGATAA
TTTCTAATCTTCTTCATTTAATCTTTGCTACAATAAATAACCATGTACCC
CTCTCTCTTTTATTATTGCTACTAATGCACCATCTTACAGAATAAGAAGA
ATTGCTACATGAAATGATATGCACAGTTATAATTTTAATAACCATTACCA
CATCATTACTGTACAGACTGTTTCAATTTGCATTTTTACCAGTAAGGTAG
CAGTTTACATTTTTGGCTTACCAATTTCTGTTCCCAAAATGTCAAAACCC
TGCCAGTCTGATGAATCAGAAAACAAAGCAAAATAGTTTTAATTTCTATT
ATGAATGTGATTAAAGATAGTTATTATGCTTTAAACCATTTTGTAACTCA
CTTTGTAACATGCATTTGAGTTTCCTGTTTTGTTTTCTAAATCAATCACA
ATAATTCATTGTATGTATTAGTGATAATACTATATACATTTTACTTAAAT
TGTCTTTTGTCTTGATTTTGTTTATGGTGGTCAGCAGAAAGCTATTCTTT
TTTTTTATTAAACATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTT
CTAGTTTCCCCTTTGAAAATCTCCTATCTCTTCTCCCCTCCCCCTGCTCT
TTATTCTATTTT
NCCGATGATAGGGTAGGCTGGCGGCGCCTGGCTTCAAAAAGXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGTTCTATTCTTGGCACCCACTCTGAGC
AGATCACCATCACCTGTAACTCCAGCTCCAAGAGATCTGGCACTGCTGGA
CTCTGCAGTCACCAACACATAACTCAAAACAATAAAAGTAAGCCTTTAAA
AGAAAACTGGACAGGTTTACGGTGTATTTTGAGAAAGGAATATCTGGACA
ATCTAGTGATGAAATACTTATGGAAACATAAAGGAGAACGAAGAAACAAA
ACTGGTTCTTAGTGCCCAAGCCTCTTAGGGAGTGGAAAAGATGTGCCATT
CACCAGCAGGAAAAAAAGTGTGAAGCTTCACACAGACAATGTACCCCAAT
ATCAGTTTATTTTAATGGAATTAACTATATATGGTTTCAATATATTTGAA
TAACATTTACGTTCATCACCAAAAGAATCTCTCGAGGATCCTGATTAACA
CAGCAGTTGCTCATAGATTGCCATGTCACCCTGATTCAGTGAGGACTCAC
AAAGGACGGAGCTGTGGACTGGACAGATTCGAAGGGAATGCTTGCTAAGG
GTTTTCATTTCTCTGCTGGCTTTGTCTTTGCTGAATCACTCTAAAGTGCT
ATGACATAGTAAATGAGTTTAGCTAACTCCATGCCCTACCCGCAGATGCC
TTGGATACAGGTAAACATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c17.b1 MSMg01no058_c17.b1 CHROMAT_FILE:
MSMg01no058_c17.b1 PHD_FILE: MSMg01no058_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:21 2005
         (437 letters)



>mm_chr14_74282453_74283289
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagtagataaccaaacccacactaattggaatttagataatttctaatcttcttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagtagataaccaaacccacactaattggaatttagataatttctaatcttcttcatt 260

                                                                       
Query: 61  taatctttgctacaataaataaccatgtacccctctctcttttattattgctactaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatctttgctacaataaataaccatgtacccctctctcttttattattgctactaatgc 320

                                                                       
Query: 121 accatcttacagaataagaagaattgctacatgaaatgatatgcacagttataattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatcttacagaataagaagaattgctacatgaaatgatatgcacagttataattttaa 380

                                                                       
Query: 181 taaccattaccacatcattactgtacagactgtttcaatttgcatttttaccagtaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaccattaccacatcattactgtacagactgtttcaatttgcatttttaccagtaaggt 440

                                                                       
Query: 241 agcagtttacatttttggcttaccaatttctgttcccaaaatgtcaaaaccctgccagtc 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agcagtttacatttttggcttaccaatttctgtccccaaaatgtcaaaaccctgccagtc 500

                                                                       
Query: 301 tgatgaatcagaaaacaaagcaaaatagttttaatttctattatgaatgtgattaaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgaatcagaaaacaaagcaaaatagttttaatttctattatgaatgtgattaaagat 560

                                                                       
Query: 361 agttattatgctttaaaccattttgtaactcactttgtaacatgcatttgagtttcctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttattatgctttaaaccattttgtaactcactttgtaacatgcatttgagtttcctgt 620

                            
Query: 421 tttgttttctaaatcaa 437
           |||||||||||||||||
Sbjct: 621 tttgttttctaaatcaa 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no058_c17.g1 MSMg01no058_c17.g1 CHROMAT_FILE:
MSMg01no058_c17.g1 PHD_FILE: MSMg01no058_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:21 2005
         (214 letters)



>mm_chr14_74452895_74453508
          Length = 614

 Score =  383 bits (198), Expect = e-111
 Identities = 210/214 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctattcttggcacccactctgagcagatcaccatcacctgtaactccagctccaag 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 513 agttctattcttggcacccactctgagcagaccaccatcacctgtaactccagctccagg 454

                                                                       
Query: 61  agatctggcactgctggactctgcagtcaccaacacataactcaaaacaataaaagtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agatctggcactgctggactctgcagtcaccaacacataactcaaaacaataaaagtaag 394

                                                                       
Query: 121 cctttaaaagaaaactggacaggtttacggtgtattttgagaaaggaatatctggacaat 180
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 393 cctttaaaagaaaactggacaggtttagggtgtattttgagaaaggattatctggacaat 334

                                             
Query: 181 ctagtgatgaaatacttatggaaacataaaggag 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 333 ctagtgatgaaatacttatggaaacataaaggag 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)