BAC Information

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BAC

Clone NameMSMg01-058C22
Chromosome14 (Build37)
Map Location 90,710,594 - 90,840,155
singlet/doubletdoublet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C22.T7 (MSMg01no058_c22.b1)MSMg01-058C22.TJ (MSMg01no058_c22.g1)
ACCAG285158AG285159
length696694
length of high quality
(start - end)
246 (73 - 318)289 (79 - 367)
definitionCHROMAT_FILE: MSMg01no058_c22.b1 PHD_FILE: MSMg01no058_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:22 2005CHROMAT_FILE: MSMg01no058_c22.g1 PHD_FILE: MSMg01no058_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,839,913 - 90,840,155)(90,710,594 - 90,710,878)
sequence
ATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTCTCTTTTCGCTTCTCTGGGGTTTTCCATACTATTTTGCAACT
GGCCAAGGGCCTTGGTGCACCTGCCGTGCTGCAGAGGTGGTTGGGGGTGA
AATTTCTTCAGGGAGCCCTGAACTCTTTTCTAAGAAACTGCAGTTGCTAA
GTAACCATACTTTCTCTTTTCATTAGAAAATTTCTAAGCCTGGAATCTAT
GTGTATGTTAAGGTACATGATTTACTGAAGAATGATACCCTGGACTCAAA
TGTTATGTAAACGCATAGTGTTCTGCAGAAGTCCAGCATGACCCATTGTC
CTTGCCTCAGGACAGGTGGCTAGCCAGCTTCTGTGGACTGGACTTGCTTG
GACTTGCACAGTCCTCCATTGCCAACTTGAAGCCAGCCATGGAGCAGCCT
AGCCTTCTCATCTGAAACCATGTTCCTCTCCTTTTAATACTTTTTTCATT
TCTTATATTCCTTATTTTTTTCCCCACTCCCCATCCTATCTCTGACTACT
TCCCTTTTAAGCCCCTCCTGCCCATCGTACTGGTTCCAGGTGGATAACCC
TACCCATTTGATTTCTCAGCTCCCCGGTGTCTTGTTGTTTGTCTGATGGT
TTAAATGCATATTCTTTTGATTGTATATAGCTCTGTACTTCTTTTG
CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGGCTTCTAAATGAGGCAA
TCCTCTCCCTGAATGTATTTATTACCCATGTATTTCAATTGTGAGAGATG
GTGTAAAAAGTTGGAACTCACAGCATCTGGACAGAAATATGAAGACGGGT
TGACCTTGCAGGTGATGAGTTATTTGCAATGCTTCAGTAGTATTCCATAT
GCAGTAGGTAAACAGCGTGATATTGCCAACAGGGGGAGCTAAAGACAGAA
GACAAATGAAGCCTTTGTGCATAGGATTGTAATTTAGCTGAACTGACAAT
ATATTATACCTTATTATTTCCTCCCACCGAGCTTAATTGATGACCTAACT
TAGATATTCTCTTAGAGTATCTTTGCAATGAATTGGATGCAAGCTGGGTG
CTTAAGTGTGCTTCCCTGCTGCTAATAGTGTGACTGCCATCTGGAGAAGA
TACCAGCTAATATGTTCCCGGAATGTGTTTCTCCATTGTTACTGCTTAAA
CAAACAATTCAGAGAGCTTCGGATAAGCTCTGAGAATAGACAACACAAGT
GCTTCCCTGACTGGGACTGGAGAAAGTTTAAGCATACAAACATCACTAAG
ACTGTACATTGCACTCTCCTTTGCAGTCAGTGGAAGTGAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c22.b1 MSMg01no058_c22.b1 CHROMAT_FILE:
MSMg01no058_c22.b1 PHD_FILE: MSMg01no058_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:22 2005
         (246 letters)



>mm_chr14_90839773_90840418
          Length = 646

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggggttttccatactattttgcaactggccaagggccttggtgcacctgccgtgctgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 383 ctggggttttccatactattttgcaactggccaagggccttggtgcacctggggtgctgc 324

                                                                       
Query: 61  agaggtggttgggggtgaaatttcttcagggagccctgaactcttttctaagaaactgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaggtggttgggggtgaaatttcttcagggagccctgaactcttttctaagaaactgca 264

                                                                       
Query: 121 gttgctaagtaaccatactttctcttttcattagaaaatttctaagcctggaatctatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttgctaagtaaccatactttctcttttcattagaaaatttctaagcctggaatctatgt 204

                                                                       
Query: 181 gtatgttaaggtacatgatttactgaagaatgataccctggactcaaatgttatgtaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtatgttaaggtacatgatttactgaagaatgataccctggactcaaatgttatgtaaac 144

              
Query: 241 gca 243
           |||
Sbjct: 143 gca 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_c22.g1 MSMg01no058_c22.g1 CHROMAT_FILE:
MSMg01no058_c22.g1 PHD_FILE: MSMg01no058_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:22 2005
         (289 letters)



>mm_chr14_90710394_90711082
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttggcttctaaatgaggcaatcctctccctgaatgtatttattacccatgtatttcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acttggcttctaaatgaggcaatcctctccctgaatgtatttattaccaatgtatttcaa 260

                                                                       
Query: 61  ttgtgagagatggtgtaaaaagttggaactcacagcatctggacagaaatatgaagacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgagagatggtgtaaaaagttggaactcacagcatctggacagaaatatgaagacgg 320

                                                                       
Query: 121 gttgaccttgcaggtgatgagttatttgcaatgcttcagtagtattccatatgcagtagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgaccttgcaggtgatgagttatttgcaatgcttcagtagtattccatatgcagtagg 380

                                                                       
Query: 181 taaacagcgtgatattgccaacagggggagctaaagacagaagacaaatgaagcctttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacagcgtgatattgccaacagggggagctaaagacagaagacaaatgaagcctttgt 440

                                                        
Query: 241 gcataggattgtaatttagctgaactgacaatatattatacctta 285
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcataggaatgtaatttagctgaactgacaatatattatacctta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)