BAC Information

Click to search

BAC

Clone NameMSMg01-058M17
Chromosome14 (Build37)
Map Location 11,290,962 - 11,291,208
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058M17.T7 (MSMg01no058_m17.b1)MSMg01-058M17.TJ (MSMg01no058_m17.g1)
ACCAG285624AG285625
length714726
length of high quality
(start - end)
442 (64 - 505)251 (78 - 328)
definitionCHROMAT_FILE: MSMg01no058_m17.b1 PHD_FILE: MSMg01no058_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005CHROMAT_FILE: MSMg01no058_m17.g1 PHD_FILE: MSMg01no058_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGCTAAACGACTCCTATATACAGAAGATGGCGCGGAATTCTTTGT
TCTGTCAAGAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC
ACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATATGTTGGTGGCCTTTTTGTCTTAT
TGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCAT
TTATTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA
TTTTTCCCCTGTATTCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACA
TGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTT
TCCATTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTG
TGTGGGTTCATCTCTGGGTGTTCAATTCTGTTCCATTGGTCTACTTGTCT
GCCACTATACCAGTACCATGCTGTTTTGATCACAATTGCTCTTGTGCACA
GTTTTAGGTCTGGCATGCTGATTCCACCAGAAGTTCTTTATCCTCGACAA
TACTTTTTGCTATC
NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTACTTCAGTGCTTCCAGGTGAG
TCGGGCTTCATAGTGAGCTCTGCACAGGTTAAAGGATCACTTTAAACTCC
CAAAGACCTAAGACTACACACACTTAACTCACAGCACGCTCTACTTCAGC
TGTAGGCACCATAGGGGAAAAGATGGAAAGGAACCAACCTATCTGCCAAC
TTTATTATGGGATGCCAGCACATGGAGCAGACATTGAAACACACGGAAAG
GCACAGAGGACCACTTTTCTATTATTAGCATTCAGTTGACAAGTGTTTGC
ATTATCTGCCCTTTGTTATTTAGCCCATAGTTTAAACATGGAACAACAGA
AAAACCTTCATCTTAAAAGATTTATGTGGGCATGTGCATGTGTGCATATG
TGTAAAACTTGGAAGGCATCCCCAGCAATCTGCTTGTCTGGGGTTACAAG
TATGTGCGGACCATGGCTTTTTATGTGAGTACTGTGGATTCAAAGACAGT
CCTCATACTTGTACAGCAAAAACTCTTTCCCTCTGTGCCATTTGACAGCC
TCTGTCTCTGTATTTTTGCTTGCTGGGAATCAAACAACTTATTGAATGAG
GAAATCATGTTTGTTTGAGGCAGTCTTGCTCTACATCACAGACTACTCAA
ACTCCAGGATCTTATACCTCAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_m17.g1 MSMg01no058_m17.g1 CHROMAT_FILE:
MSMg01no058_m17.g1 PHD_FILE: MSMg01no058_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:08 2005
         (251 letters)



>mm_chr14_11290762_11291412
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacttcagtgcttccaggtgagtcgggcttcatagtgagctctgcacaggttaaaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacttcagtgcttccaggtgagtcgggcttcatagtgagctctgcacaggttaaaggat 260

                                                                       
Query: 61  cactttaaactcccaaagacctaagactacacacacttaactcacagcacgctctacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactttaaactcccaaagacctaagactacacacacttaactcacagcacgctctacttc 320

                                                                       
Query: 121 agctgtaggcaccataggggaaaagatggaaaggaaccaacctatctgccaactttatta 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgtaggcaccatagggaaaaagatggaaaggaaccaacctatctgccaactttatta 380

                                                                       
Query: 181 tgggatgccagcacatggagcagacattgaaacacacggaaaggcacagaggaccacttt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggatgccagcacagggagcagacattgaaacacacggaaaggcacagaggaccacttt 440

                  
Query: 241 tctatta 247
           |||||||
Sbjct: 441 tctatta 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)