BAC Information

Click to search

BAC

Clone NameMSMg01-058O01
Chromosome14 (Build37)
Map Location 102,905,047 - 102,905,242
singlet/doubletsinglet
Overlap geneLOC669278
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058O01.T7 (MSMg01no058_o01.b1)MSMg01-058O01.TJ (MSMg01no058_o01.g1)
ACCAG285688AG285689
length707713
length of high quality
(start - end)
342 (62 - 403)196 (332 - 527)
definitionCHROMAT_FILE: MSMg01no058_o01.b1 PHD_FILE: MSMg01no058_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:14 2005CHROMAT_FILE: MSMg01no058_o01.g1 PHD_FILE: MSMg01no058_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACAGGAGCCGCGGAATTC
TCACTTTACCAATACCGAATGGNAGAGAAGCACCTGAAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCAC
TTCACTCCAGTCAGAATGGCTAACATAAAAAACTCAGGTGACAGCAGATG
TTGGCGTGGATGTGGACAAAGAGGGACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGATATAGTACTATCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGTTCCACTATGTTCA
TAGCAGCCTTGTTTATAATAGCCAGAATCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACTATGGAATA
CTACTCCGCTATTAAAAAACGAATTTATGAAATTCCTAGGCAAATGGATG
GACCTGGAGGCTATCATCTTGAGTGAAGTAACCCTAATCACAAAGGAACT
CGTACAATATGCACTTACTGATCCCTGGATTATACCCCTCAACCTTACGA
TACCCTCCATATCAGAAACAACTTGTTTAACGCATGACATTCCAGAATAA
CGCACAT
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAAAGGGA
GGTGAACTATAGAATGTCCCGCGAAATTCACCTCTGACTAGCCAAAGGTT
TGCTAACATCTAGAATCTGAAAAGAACAGTTGAAGTGTTGTTAAAGGAAA
GTGTGGATTCAATCAACAACTGAAATCGGGTATTCCTGCCCAGAGTGTGA
TGCATCCACATAGATTAGTCTCTTGCTGAATAAGAATTTTAGTGTTTCTC
ATGTGAACCACACAGTTCTCTTGTGGAGACAAACCAAGTTGGGACAGACT
TGATTTCATTTTCCTTAGAAACAAGTACAAAAGAAATAATTTGAGGCCTG
CATAAAAATGTCTTATAAACATACAATTACATTTTGGCTTTCTGCAGACT
CAACTCATTAAGCCATGAGTGATTGCAGATGTTGTGGTCAGATTCTCCTG
GTCAAAGATTTGGCTACTCAGGTTATCCTCAAGGGAAATTGGCAAACCCA
ATGGTGGCATTTTTAGAACAAGAGGGCTGAAGGAGTCTCCCAGGGTAGTT
CATTTGTTTGTGTGTAATAAGAATAGCATCACACTCCAAGCTGTCATTTA
ATTCATAACCAAATGCCTGTGAATCAAATGATACTTTACTATGTGGAGCC
AATACAACAGCAAGAGGTGTTGGATGTCGGAGAAAGCTGTATTATGCACA
GAGTGTTTTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_o01.g1 MSMg01no058_o01.g1 CHROMAT_FILE:
MSMg01no058_o01.g1 PHD_FILE: MSMg01no058_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:14 2005
         (196 letters)



>mm_chr14_102904847_102905442
          Length = 596

 Score =  348 bits (180), Expect = e-100
 Identities = 192/196 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaataatttgaggcctgcataaaaatgtcttataaacatacaattacattttggcttt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agaaataatttgaggcctggataaaaatgtcttataaacatacaattacattttggcttt 337

                                                                       
Query: 61  ctgcagactcaactcattaagccatgagtgattgcagatgttgtggtcagattctcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgcagactcaactcattaagccatgagtgattgcagatgttgtggtcagattctcctgg 277

                                                                       
Query: 121 tcaaagatttggctactcaggttatcctcaagggaaattggcaaacccaatggtggcatt 180
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 276 ccaaagatttggctactcaggttatcctcaagggaaactggcaaacccaatggtggtatt 217

                           
Query: 181 tttagaacaagagggc 196
           ||||||||||||||||
Sbjct: 216 tttagaacaagagggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)