BAC Information

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BAC

Clone NameMSMg01-059J05
Chromosome14 (Build37)
Map Location 35,314,278 - 35,314,463
singlet/doubletsinglet
Overlap geneBmpr1a
Upstream geneFrmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2
Downstream gene9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J05.T7 (MSMg01no059_j05.b1)MSMg01-059J05.TJ (MSMg01no059_j05.g1)
ACCAG286221AG286222
length708712
length of high quality
(start - end)
510 (69 - 578)180 (72 - 251)
definitionCHROMAT_FILE: MSMg01no059_j05.b1 PHD_FILE: MSMg01no059_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:07 2005CHROMAT_FILE: MSMg01no059_j05.g1 PHD_FILE: MSMg01no059_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAAGACCGCGGAAT
CTCTGTTTATTCATAGAACCATTTCTCATTGATTATTTGTGTTGTGGTGT
CTAACTTCTTGAGTTCTTTGTAAGTTTTGGAGATTAGTTCTCTGTCAAAT
GTAGTGTTGGTGAATATCCTTTCCCAATCAGTTGGTTGCTGTCAATTTTG
TATCCAGCCACTTTGAACAATGGATAAAGAAAATGAGGTACATCTACACA
ATAGACTACTATTTAGCTATTAAAAACAAGGCCATCATGAAATTTGCAGG
TAAATGGATGGAACTCTATCATCCTGAGTGAGGTAACCCAGCCCCAAAAG
AGACATGCATGGTATATACTCTCTTATAAGTGAATATTAGCCATAAAGTA
CAGGATACCCATGCTACACTCCACAGACCTAAAGAAGCTAAACAAGAAAG
AAAGTACAAATGATGATGCTTGAATCTCCCTTAGAAGGGGGAATAAAACA
GTCAAAAGTGGCAGATGGAAGGAGGGAACTGAGAGGGAGGTGGATGGGGG
CATTCATGATCAGGTGTGGGGAGGGATAGGAGAGATTTGCCGATGACCTT
GCGAACGATATGTTAATCTTCTTTTTGCTCAGGTACTATAAGTCCTAGCT
CCTCGTCCCCTTCTTCTATCTACTCCCTCCACCAATCCCTCACCTACCCC
ACTACCAT
AATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCACTCTTAAAAGGGAGAAGGAAGGAAA
GTTAAAAAGGTCTCCCCCTACAATGGGGGGGGGGGGCGGCGAGGATATAA
AACAGAGTACAGGTTTAATTAAAAACCCATTCCAATTTTAAATCTGTTTT
CCATAAACTCTGGGTTCCCAAGAAGTGTTCATAGTTTAGTTCTGACATTA
TAAAAAAACAAAAAAAAAACAAAAACTAATATAGTTTTGTTCAACATCTT
TTAGTTCGAGAACAATGATATTCTTTAAATTACCTTTTATTTTATCTCGA
AGTTTAATTTCCCCTCACGAGCCCCCACACTGTCGGTTTACTACTGAAGT
CAACCCTGGAGTTCGTGAATAACTAGAAAACGCTCCTAGGCCTTCATATA
ATTTCGCTTTATTACCATACCCTTATCCTTGAATACCATGTCCCTGGGTT
CTATCCCGGTTCATTTTTCTAACTTATATACCCCCCTGCATCTCGATTCT
CCCTTCCTAATCTCCATAAAACCCCCCTTAATGTTTATCTTCCCAATTCT
TTCGTCCTGTTCTATACTCTACCCACCTATTCACGTATTTTTATTTCCCT
TCTCACCTTTCCTTTATATTATAATTTAAACTTTTAACCCATTTAACTCC
ACAATATAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j05.g1 MSMg01no059_j05.g1 CHROMAT_FILE:
MSMg01no059_j05.g1 PHD_FILE: MSMg01no059_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:07 2005
         (180 letters)



>mm_chr14_35314083_35314667
          Length = 585

 Score =  286 bits (148), Expect = 4e-82
 Identities = 173/186 (93%), Gaps = 10/186 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactcttaaa-----agggagaaggaaggaaagttaaaaaggtctccccctaca-atg 54
           ||||||||||||     |||||||||||| |||||||||||||||||||||||| |  ||
Sbjct: 196 ttcactcttaaaagggtagggagaaggaaagaaagttaaaaaggtctccccctagatttg 255

                                                                       
Query: 55  ggggggggg----ggcggcgaggatataaaacagagtacaggtttaattaaaaacccatt 110
           |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggggggggggggcggcggcgaggatataaaacagagtacaggtttaattaaaaacccatt 315

                                                                       
Query: 111 ccaattttaaatctgttttccataaactctgggttcccaagaagtgttcatagtttagtt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccaattttaaatctgttttccataaactctgggttcccaagaagtgttcatagtttagtt 375

                 
Query: 171 ctgaca 176
           ||||||
Sbjct: 376 ctgaca 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 585
Length adjustment: 8
Effective length of query: 172
Effective length of database: 577
Effective search space:    99244
Effective search space used:    99244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)