Query= MSMg01no059_n11.b1 MSMg01no059_n11.b1 CHROMAT_FILE:
MSMg01no059_n11.b1 PHD_FILE: MSMg01no059_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:26 2005
(639 letters)
>mm_chr14_17915200_17916238
Length = 1039
Score = 843 bits (436), Expect = 0.0
Identities = 470/484 (97%), Gaps = 11/484 (2%)
Strand = Plus / Minus
Query: 5 gaattcccacttttcc---aaggcagctt-aataaaaag-aatttttaattgtggctgct 59
|||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 479 gaattcccac--ttccaggaaggcagcttaaataaaaagcaatttttaattgtggctgct 422
Query: 60 tcctcagtgcctgaccagttttagttttgtttctaaacagacctgtccttttcaagtcac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcctcagtgcctgaccagttttagttttgtttctaaacagacctgtccttttcaagtcac 362
Query: 120 cgcattacctgccacttgggtgcaagctgtattctattgtcaggacccagcatgaacttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgcattacctgccacttgggtgcaagctgtattctattgtcaggacccagcatgaacttt 302
Query: 180 cccagagcaaaagtgatcaggacattcagagaaacaagccttctgggagggg-ggggggc 238
|||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct: 301 cccagagcaaaagtgatcaggacactcagagaaacaagccttctggg-ggggtgggggg- 244
Query: 239 agcagacaacttgtttattgttgatttgtttttgagacaggctttcactatgaaacccta 298
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 -gcagacagcttgtttattgttgatttgtttttgagacaggctttcactatgaaacccta 185
Query: 299 gctggtctatgtagacaaggctaattccaactctgaaaactgccttctttgcctctaaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gctggtctatgtagacaaggctaattccaactctgaaaactgccttctttgcctctaaag 125
Query: 359 ttctagagttaacaggcatgcattgccacaacaggtgagagtttattaacatttcagttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttctagagttaacaggcatgcattgccacaacaggtgagagtttattaacatttcagttt 65
Query: 419 aaccactttaaaccagtttacttttttttttaaatcaaggagtcagtatttttttaaatg 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aaccactttaaaccagtttacatttttttttaaatcaaggagtcagtatttttttaaatg 5
Query: 479 aaac 482
||||
Sbjct: 4 aaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_n11.g1 MSMg01no059_n11.g1 CHROMAT_FILE:
MSMg01no059_n11.g1 PHD_FILE: MSMg01no059_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:26 2005
(243 letters)
>mm_chr14_17826601_17827243
Length = 643
Score = 395 bits (204), Expect = e-114
Identities = 219/224 (97%)
Strand = Plus / Plus
Query: 1 aagagaattagaaatctagagaaaggtaggaggttagaagcagagcacatggggtaaaca 60
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 201 aagagaattagaaatctagagaaagttaggaggttagaagcagagcaaatggggtaaaca 260
Query: 61 cttgaggggttggccttcatagctactcctgtgataacatcctgtgctcctctggataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaggggttggccttcatagctactcctgtgataacatcctgtgctcctctggataac 320
Query: 121 actcctgaaggaggcacacatcctcctgtttctagtcaatcacattgctacccacaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcctgaaggaggcacacatcctcctgtttctagtcaatcacattgctacccacaaagt 380
Query: 181 ggtgtgtgtagtgactagataagtttgctattggtagaaaataa 224
|||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 381 ggtgtgtgtagtgactaggtcagtttgctattggtaaaaaataa 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
