BAC Information

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BAC

Clone NameMSMg01-060C01
Chromosome14 (Build37)
Map Location 20,969,729 - 20,970,345
singlet/doubletsinglet
Overlap geneKcnk5
Upstream geneLOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
Downstream geneLOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060C01.T7 (MSMg01no060_c01.b1)MSMg01-060C01.TJ (MSMg01no060_c01.g1)
ACCAG286645AG286646
length713883
length of high quality
(start - end)
622 (44 - 665)---
definitionCHROMAT_FILE: MSMg01no060_c01.b1 PHD_FILE: MSMg01no060_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:47 2005CHROMAT_FILE: MSMg01no060_c01.g1 PHD_FILE: MSMg01no060_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCGGA
ATTCACATCCTTGCCCTGCCACTTACCTTGGACTGGACCCTGCTTTCTTA
TCGTTAAAATAGGCTAAGGGTCCCTGCTTTGCAAGACCTAGCCATTCCGT
GAGAGAAGTGTTTTAAGTACATGATCAGTACCTGTCCCCACACGTGCCCA
ACTATAACTTCAGCAGCTACACAGTTAAGAGGTGGTGTCTGGAAAAGCCA
CAGTAAGGAGGCTGATAATGGCTTCAGTATTTGAGGTCTTAAGCACCGTG
GACAGGTGAGGTGACTTTCCAGAACAGAGGGACTGTGTGAGCACAAAGGA
TTAAAGAAAGGATCCAGAGGCAGCCAGTGAGAGCACGAGGATTCTGGCTC
TTGGAACACCATAGGACCGCAGTTTTCCAGGTCAGGAGTAGAGGATGGAA
GAAGGGCTGTGTTCGGGAAGCCATAGGAGTCGTGGGAGAGATCAAATAGC
TGCATGGATGCTTCTTAGCTGGAACCCCTGCAGTAGGCTCATGTCTTGGC
CAGTTCCCCCCACCCTATGCAAAGAAAAGTCCACCTGACTGCGGCGGTGT
GGTCGGTCGGTGTCTACAGGTTAGAGTGCGCGTGTGGATGTTGGCCACTA
TAATAACTGCTGGGAATGGCTGGACTGGTTTTTGGGCACTGTTTTCTCAG
CTGGTGGCAAAGG
GGGGGGTGGTNGGCCGGGGGGGGCTTAATCCGGAGGNAGGGGGNNNGNNN
GNNNNNNATTTTCCGCAAAAAAGAGAGGNGNNNANGNGGAGGGAAGGAGN
NNNNGAGGANNNGGGNNGNAGGAGGCCCGAAAAAANAGAAGNNNGNNGAG
GGCGGGGAGNGGGAAGGGGAGGAAGAGAGGAAAGAAAAAGAGAAAAAAGA
AAGAAAAAAAAAGAGGAAGAAAGAGAAAAANGAGGGAGAGGGAGAAAAGA
AGGGGGGGNGANGGNNNNNNGGGGNNNNNAAAAAAANNANAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAAGAGAGGGCGCAGGAAGGGGGGGGCCCC
CCCNNCNCTCTGAGNNNCGGAGGAGAGGGTTNNCNNNCAGGCCAGGGGAT
GGGAGGANNGCNNNNCGCGTCAGAGGGAGAAAGAGAGGGGGGNNNTCCNN
NAGGAGAGAGAGGGGCGCCGTCCGGCANTCGGAGGGGCGAGAGAGGAGGG
CGCCCCGGAAAGGGGAGGCCCCNCNNNNCCCCCNCCANNCNNGGCGAGAG
AGGAGGAGGAGGGACAAANNNAAAACATCACCTCTAACGACANCAACCAC
AAACANNCAAGCCCCGNCCGGCGTCGCTCTCCGGGGGCGGTGGCGAGAGA
GGGCGCTGACCGAGGTANNTATAAGAGGTNTNNNNGTGNCGGAGTTTAGG
AGAATGAAAAGAGAGAAAAAACGCCCCCCCCCCCGCCCCCACCGTATTGG
GGATTTAGTGTTTCNCNCCCACAACGCAGGGGAGGGGAGACAGCATCNNC
CNCTGTNGGGGGGGGGGGGGNCNTGGGTGGGGGAGGGNTGTGTCTCTTTA
GTCTCTANNNCACCGACTGCGACCCCTCCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_c01.b1 MSMg01no060_c01.b1 CHROMAT_FILE:
MSMg01no060_c01.b1 PHD_FILE: MSMg01no060_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:47 2005
         (622 letters)



>mm_chr14_20969524_20970545
          Length = 1022

 Score = 1085 bits (561), Expect = 0.0
 Identities = 603/617 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacatccttgccctgccacttaccttggactggaccctgctttcttatcgttaaa 65
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaattcacatcccagctctgccacttaccttggactggaccctgctttcttatcgttaaa 763

                                                                       
Query: 66  ataggctaagggtccctgctttgcaagacctagccattccgtgagagaagtgttttaagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ataggctaagggtccctgctttgcaagacctagccattccgtgagagaagtgttttaagt 703

                                                                       
Query: 126 acatgatcagtacctgtccccacacgtgcccaactataacttcagcagctacacagttaa 185
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 702 acatgatcagtacctgtccccacacgtgcccaactatcacttcagcagctacacagttaa 643

                                                                       
Query: 186 gaggtggtgtctggaaaagccacagtaaggaggctgataatggcttcagtatttgaggtc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaggtggtgtctggaaaagccacagtaaggaggctgataatggcttcagtatttgaggtc 583

                                                                       
Query: 246 ttaagcaccgtggacaggtgaggtgactttccagaacagagggactgtgtgagcacaaag 305
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttaagcaccgtggacaggtgaagtgactttccagaacagagggactgtgtgagcacaaag 523

                                                                       
Query: 306 gattaaagaaaggatccagaggcagccagtgagagcacgaggattctggctcttggaaca 365
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 522 gattaaagaagggatccagaggcagccagtgagagcacgagggttctggctcttggaaca 463

                                                                       
Query: 366 ccataggaccgcagttttccaggtcaggagtagaggatggaagaagggctgtgttcggga 425
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccataggactgcagttttccaggtcaggagtagaggatggaagaagggctgtgttcggga 403

                                                                       
Query: 426 agccataggagtcgtgggagagatcaaatagctgcatggatgcttcttagctggaacccc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agccataggagtcgtgggagagatcaaatagctgcatggatgcttcttagctggaacccc 343

                                                                       
Query: 486 tgcagtaggctcatgtcttggccagttccccccaccctatgcaaagaaaagtccacctga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgcagtaggctcatgtcttggccagttccccccaccctatgcaaagaaaagtccacctga 283

                                                                       
Query: 546 ctgcggcggtgtggtcggtcggtgtctacaggttagagtgcgcgtgtggatgttggccac 605
           |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 282 ctgcggtggcgtggtcggtcggtgtctacaggttagagtgggcgtgtggatgttggccac 223

                            
Query: 606 tataataactgctggga 622
           || || | |||||||||
Sbjct: 222 tagaagacctgctggga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)