Query= MSMg01no060_e03.b1 MSMg01no060_e03.b1 CHROMAT_FILE:
MSMg01no060_e03.b1 PHD_FILE: MSMg01no060_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:57 2005
(670 letters)
>mm_chr14_120040846_120041917
Length = 1072
Score = 1120 bits (579), Expect = 0.0
Identities = 647/677 (95%), Gaps = 18/677 (2%)
Strand = Plus / Minus
Query: 4 ggaattctgaattgtc-tcccaagtgccatccttaaggacaaagaagtggctttgaagaa 62
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ggaattctgaattg-cattccaagtgccatccttaaggacaaagaagtggctttgaagaa 814
Query: 63 aggaattatgttattagatgtccactttaatccccagaagactctgttttatttttgcgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 813 aggaattatgttattagatgtccactttaatccccagaagactctgttttatttttgtgg 754
Query: 123 gtactagagaatcaaatacaggagttttcacaagcttggcaagtgatctatcactaagtt 182
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 753 gtactagagaatcaaatacaggacttttcacaagcttggcaagtgatctattactaagtt 694
Query: 183 acatctacggctctttatatgtctttttgaaaagatacatctaggtgctgtgagagagga 242
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 693 acatctacggctctttatatgtctttttgaaaagacacatctaggtgctgtgagagagga 634
Query: 243 gtccaggttaactcaaaagttttggtcttccctcattaaaccacagagtcattatcaatt 302
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 633 gtccaggttgactcaaaagtttt-atcttccctcattaaaccacagagtcattatcaatt 575
Query: 303 aaaccatacaaagt-----ggggggaaaacatacacgaagtgttagtttgacttttgttg 357
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 574 aaaccatacaaagtggggggggggg--aacatacacgaagtgttagtttgacttttgttg 517
Query: 358 ggagaattttca----gccccacatacccaggaggaacctagcaagcagatgcatggttg 413
|||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggagaattttcagtttg----agatacccaggaggaacctagcaagcagatgcatggttg 461
Query: 414 actccagaggcagcttgaaaagcttacaccaaaatctaaatttattataaacgaggaaaa 473
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 460 actccagaggcagcttgaaaagcttgcaccaaaatctaaatttattataaacgaggaaaa 401
Query: 474 ccttaggagctataaaatttgggatgagtggggacacggaaattaagacaactaccttct 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccataggagctataaaatttgggatgagtggggacacggaaattaagacaactaccttct 341
Query: 534 ttctcagccttagaatacaacccacagatagatgtgggatagttgtgcaagctataaaaa 593
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 340 ttctcagccttagaatacaacccacagatagaggtgggatagttgtgcaagctataaaaa 281
Query: 594 aggatgttgagggagacactgagaaggtgagaaaacggtagagtcaagcagatcaagtgc 653
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 280 aggatgttgagggagacactgagaaggtgagaaaagggtagagtcaagcagatcaagtgc 221
Query: 654 tgcttgaatgccactgt 670
|||||||||||||||||
Sbjct: 220 tgcttgaatgccactgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1072
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1062
Effective search space: 700920
Effective search space used: 700920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_e03.g1 MSMg01no060_e03.g1 CHROMAT_FILE:
MSMg01no060_e03.g1 PHD_FILE: MSMg01no060_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:57 2005
(585 letters)
>mm_chr14_119914824_119915808
Length = 985
Score = 1087 bits (562), Expect = 0.0
Identities = 577/582 (99%)
Strand = Plus / Plus
Query: 1 tctctcagttgtggaatttcttgggaaatttaagcgttcacacccctgagatccaaaata 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttagttgtggaatttcttgggaaatttaagcgttcacacccctgagatccaaaata 260
Query: 61 agacctctgagtaaatactctgaagaaacttttgtacactgttgaacagaaatatccgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacctctgagtaaatactctgaagaaacttttgtacactgttgaacagaaatatccgtg 320
Query: 121 gtatcataggttgtctgagctaagagtagaaacaaggtagaggctctaaatgtagactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatcataggttgtctgagctaagagtagaaacaaggtagaggctctaaatgtagactct 380
Query: 181 agtggaaagaacaaattttccagaaattgctgtgcatttaagtgtattctcagtaaaatt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggaaagaacagattttccagaaattgctgtgcatttaagtgtattctcagtaaaatt 440
Query: 241 tcatcacctgttgttggtaggtagcctaatggaacataagagaagtagtctggttggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatcacctgttgttggtaggtagcctaatggaacataagagaagtagtctggttggcag 500
Query: 301 gttctgatgcgggcagttatgtgggcagtgatgctgccgaccaggatagtttctctagac 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 gttctgatgcgggcagttatgtgggcagtgatgctgttgaccaggatagtttctctagac 560
Query: 361 gttgcaataacattgtaaatgacaaagaacagatagaaaccctgagaagttcttacggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgcaataacattgtaaatgacaaagaacagatagaaaccctgagaagttcttacggtc 620
Query: 421 ttcaagccacttgaaaacagctcatagttttcaagaatatctacaataaatataatatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaagccacttgaaaacagctcatagttttcaagaatatctacaataaatataatatat 680
Query: 481 tggcaagacacttgaacacagaacgaggtgagggtagaaaggaaggtgaggagcaaggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcaagacacttgaacacagaacgaggtgagggtagaaaggaaggtgaggagcaaggaa 740
Query: 541 tatatgagtgtcagcaaacacgtttagcatcttggcaaacat 582
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 tatatgagtgtcagcaaacacgtttagcatgttggcaaacat 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
