BAC Information

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BAC

Clone NameMSMg01-061C21
Chromosome14 (Build37)
Map Location 102,584,204 - 102,584,545
singlet/doubletsinglet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C21.T7 (MSMg01no061_c21.b1)MSMg01-061C21.TJ (MSMg01no061_c21.g1)
ACCAG287449AG287450
length706703
length of high quality
(start - end)
345 (126 - 470)155 (219 - 373)
definitionCHROMAT_FILE: MSMg01no061_c21.b1 PHD_FILE: MSMg01no061_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:05 2005CHROMAT_FILE: MSMg01no061_c21.g1 PHD_FILE: MSMg01no061_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGG
AATTCAGTTTCGTTACGCTCACTAAGAGTATCCCCACCCTCCTTTCCTTT
GTTTAATACCTAGGCCATATGACCGAGAAGTGAGACACATCTAAAAATAC
AAGGACAGTGAAGGTCTTAGATTTATTAAAACTCATTAATATTAATAGCA
GTTAAGCTTTATTAGGTAATCATTTTCTCCCAGTGTTTGATGGGAATTAT
CTTAACTCACCTCTCTTCATTACAATGAATACGCTGAGACTTGAAGGTAT
TAAACATTTTCTCAAAGGATTTTTTTTTCATTTTAATGTCATTTATCATC
ATATACTAGTTATATGTAATAATAATTCACTATGACATTTTCATACATAC
TCTTCAAGATTTTATAGCTAACAAACGTCGTGATGGAATTTAAACTTGTA
ATTTCCTAATTATACTAATTGATTACATTGCTAGCTTTAGGACATGTTAA
ATTTAGATGTGTTAATTGTAGAAAGATGTCAAATCCTGGAAGAAGAGGTT
TTCTTTTATATTGACTGGTTTGTAACGGAGATGGTTGCCTTCATTGCATA
ACTCATGTAGTGAAAGTTGAAAAAGGACTTGTCTTATAGCGTAAAAAGGG
GGGACTATGGTAACTGGCACAGACTGGGACACAGTTGATGAAAAGGTGAC
ACAAAN
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAACCGGATGAAAATAATAAT
CCATTAATAAATATATACCGATCTAACCAGAGAATTCTCAAGAAAGGAAA
CTTAAGGGGCTAAGAAATACTTAAAGACAAGTTTAACATGTGTATACAAC
AGAGAAACGCGCATCCAAACTACTTTGAGTTTCTCTGCAATTCCATCTTA
TATCTGCCAGAGTGGCTAACTGATAACAGAAGTACAACTCAGGCAAGTTC
ACAACACTAAGTGTTTACTTTAAAATATATGAGAGATTTCAGATTAGTAA
TTTACTAGCGTATGCAAAACCCACAGGAATCTAGAACCAAAAGAGAAAAT
GATACACACGGGAAGTGGACACTAGAACCCGCTTGGGACTGAGATCGGTA
AAATAGAAATACACAAATGACAATGGCAAAAAGGAAACGGTAGAAAGAAC
CAATGAAAAAAAGACTAGGTTCTTTGAGAGAATCAGCAAGATAGAGGAAT
CCTTAGCCAGATTAGTGAGGAGAAAGAAGAGATCGAAATTAGCGAAATTA
GAGACGAGAAGGAAATCATAACAACTGCCACCTAGGAAATCCAAAGAATC
GGAGACCTGAGCTCCAACAAATTGCAAGTTTTTCAAAGCGGAGATACTCT
GTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c21.b1 MSMg01no061_c21.b1 CHROMAT_FILE:
MSMg01no061_c21.b1 PHD_FILE: MSMg01no061_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:05 2005
         (345 letters)



>mm_chr14_102584004_102584745
          Length = 742

 Score =  621 bits (321), Expect = 0.0
 Identities = 338/345 (97%), Gaps = 3/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtgagacacatctaaaaatacaaggacagtgaaggtcttagatttattaaaactca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagtgagacacatctaagaatacaaggacagtgaaggtcttagatttattaaaactca 260

                                                                       
Query: 61  ttaatattaatagcagttaagctttattaggtaatcattttctcccagtgtttgatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatattaatagcagttaagctttattaggtaatcattttctcccagtgtttgatggga 320

                                                                       
Query: 121 attatcttaactcacctctcttcattacaatgaatacgctgagacttgaaggtattaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatcttaactcacctctcttcattacaatgaatacgctgagacttgaaggtattaaac 380

                                                                       
Query: 181 attttctcaaaggatttttttttcattttaatgtcatttatcatcatatactagttatat 240
           |||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 attttctcaaagg---tttttttcattttaatgtcatttatcatcatatactaattatat 437

                                                                       
Query: 241 gtaataataattcactatgacattttcatacatactcttcaagattttatagctaacaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 438 gtaataataattcactatgacattttcatacatactcttcaagattttatagctaataaa 497

                                                        
Query: 301 cgtcgtgatggaatttaaacttgtaatttcctaattatactaatt 345
           ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 cgtcgtgatggaatttaaacttgtagtttcctaattatactaatt 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 742
Length adjustment: 9
Effective length of query: 336
Effective length of database: 733
Effective search space:   246288
Effective search space used:   246288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)