BAC Information

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BAC

Clone NameMSMg01-061H12
Chromosome14 (Build37)
Map Location 51,470,314 - 51,470,652
singlet/doubletsinglet
Overlap geneTep1
Upstream geneOlfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2
Downstream geneEG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061H12.T7 (MSMg01no061_h12.b1)MSMg01-061H12.TJ (MSMg01no061_h12.g1)
ACCAG287671AG287672
length791739
length of high quality
(start - end)
247 (71 - 317)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no061_h12.b1 PHD_FILE: MSMg01no061_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:27 2005CHROMAT_FILE: MSMg01no061_h12.g1 PHD_FILE: MSMg01no061_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGAA
TTCAAAACTATTCTCCTTTTGTAAATTTTTATTAGATACTTTCTTCATTT
ACATTTCAAATGCTATCCCCAAAGCCACCATATGGTTACTGAGAATTGAA
CTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTC
TCCAGCCCAAGTCAAAGTATCCTTAATTGCAGAGGATCTGCTAGTATATG
TACATAACCCTAAAAAGTCCGCTTGGAAACTCCTACAGCTGATGAACACT
TTCAGCAAAGTTACTGTGTTCTTAATGAATTTACAAAAATCAATATCCCT
CCTATAGACTAATGACACAAGTATTGATAAATAAATCATGTTCACAACAA
CTTTTACTATAGTCTCCACCACTAAAAATATGTATTGGTATAACTCTAAT
CTAGCTAGTGAAAAACTTGTATGATAATTGAAGAACATATTAGCAGGTGT
AAAGCTCTCTCATGCTCATGAGTCTTTAGGATTGACCTACTTATAATTGT
CCCATCCTATTAAAAGCATATCTCCATTCTAAATTCAAACAATTCCTTCC
AAGATCTTCGATATCGAAAATTTTTCAGCTTCAAAATGGAATTCTGTAAC
TTTCTGGATTTATTTATTAACCATCTTTGTCATCATTTTTTATATAATCT
TTATAATTTACTATATCTTAATATTTTGATTGGTCCCTCACTCCCTTTCC
CTGAAATTCTTATGTTAGTCATACGCTCACTATTTTATCGC
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTGCCAGATAATCTGTTTGG
CTACTTTCAGGAGCTCGGTATCCATCCTTTGACCAAACAGGATGACCCTG
TCAATCTGTAAGATGAAAAGAGGAGGCTGAGATCCGGGATCCAGGCTAAA
ATAGACATGGATGAGCTCAGAGCGTCAGGATGCTTAAGGACTGACGGGTT
AGAATGCTGAGGGGAAAGGAAAGTGCAGCTCCTGAGAATGCTTAGAAGGG
ATGCCACTACACCCCAACCTAGGGTGGCATCAAAGAATCAGGGACAGCAG
GGATGGGAAGAAAAGAAAAAGAAGTGAGGGATTGTGTTGTGGAGCTCATT
CATGCTCATGAGAGATGACACCCCACTGTGAAACTGTTTTTTGGGTTTTT
TTTGTTTTTTAAATTCCTTTCGTTTTTGTTCCTGCCGGGTTCTTGTCCTC
TCTTTCCCTTTTTCTTCCCTTCCCTCCCTTCTCCTTTTCCCCTTTCCTCC
CTTTTCTCTTTTTTCCTCCTTTCCCTTCTTTCCCTTTCTTCTCTCCCCTT
CTCTCCCTTCTTCCCTTTTTTCCTACCTATCTTATCTCTCCTTTCCCCTC
CCTATATTATCCCCTCTCTAATTTCTCGTTCTCTTTTCCCTCGCTTTTTC
TCTTCCCTTTCGCCTTCCCTCTTTATCCTCTCCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_h12.g1 MSMg01no061_h12.g1 CHROMAT_FILE:
MSMg01no061_h12.g1 PHD_FILE: MSMg01no061_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:27 2005
         (339 letters)



>mm_chr14_51470114_51470852
          Length = 739

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctgccagataatctgtttggctactttcaggagctcggtatccatcctttgaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgctgccagataatctgtttggctactttcaggagctcggtatccatcctttgaccaa 260

                                                                       
Query: 61  acaggatgaccctgtcaatctgtaagatgaaaagaggaggctgagatccgggatccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggatgaccctgtcaatctgtaagatgaaaagaggaggctgagatccgggatccaggc 320

                                                                       
Query: 121 taaaatagacatggatgagctcagagcgtcaggatgcttaaggactgacgggttagaatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 taaaatagacatggatgagctcagagcgtcaggatgcttaaggactgatgggttagaatg 380

                                                                       
Query: 181 ctgaggggaaaggaaagtgcagctcctgagaatgcttagaagggatgccactacacccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaggggaaaggaaagtgcagctcctgagaatgcttagaagggatgccactacacccca 440

                                                                       
Query: 241 acctagggtggcatcaaagaatcagggacagcagggatgggaagaaaagaaaaagaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctagggtggcatcaaagaatcagggacagcagggatgggaagaaaagaaaaagaagtg 500

                                                  
Query: 301 agggattgtgttgtggagctcattcatgctcatgagaga 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggattgtgttgtggagctcattcatgctcatgagaga 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)