Query= MSMg01no061_m16.b1 MSMg01no061_m16.b1 CHROMAT_FILE:
MSMg01no061_m16.b1 PHD_FILE: MSMg01no061_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:52 2005
(244 letters)
>mm_chr14_65132455_65133101
Length = 647
Score = 449 bits (232), Expect = e-131
Identities = 242/246 (98%), Gaps = 3/246 (1%)
Strand = Plus / Plus
Query: 1 tggcacttttagaggaggttctggaaaactaagaaagggtgaggccgaattagcaaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcacttttagaggaggttctggaaaactaagaaagggtgaggccgaattagcaaggat 260
Query: 61 ccaatatccatcagggacagtggggcttctctgaaggacgtgggccactgggctctctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatatccatcagggacagtggggcttctctgaaggacgtgggccactgggctctctat 320
Query: 121 gtgcccagtgatgccagttccttcctcacttgtaacttcctattttggttctctctgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcccagtgatgccagttccttcctcacttgtaacttcctattttggttctctctgctt 380
Query: 181 cctgtctgccagaagaacagcctcctcctc-t--acatattcctcccaccgaaatgtttt 237
|||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 381 cctgtctgccagaagaacagcctcctcctcctccacatattcctcccacggaaatgtttt 440
Query: 238 gtgtca 243
||||||
Sbjct: 441 gtgtca 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 647
Length adjustment: 9
Effective length of query: 235
Effective length of database: 638
Effective search space: 149930
Effective search space used: 149930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no061_m16.g1 MSMg01no061_m16.g1 CHROMAT_FILE:
MSMg01no061_m16.g1 PHD_FILE: MSMg01no061_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:52 2005
(459 letters)
>mm_chr14_65284247_65285105
Length = 859
Score = 710 bits (367), Expect = 0.0
Identities = 394/403 (97%), Gaps = 2/403 (0%)
Strand = Plus / Minus
Query: 54 gcagcctttaacacgtaattagctatctgcaattctttattagctcagggctttttgttt 113
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 859 gcagcctttaacacgtaattagctatcttcaattctttattagctcagggctttttgttt 800
Query: 114 attcatttattttttttgttgggagtggttttcttgagatggcattttaccctgaaaccc 173
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 799 attcattt-ttttttttgttgggagtggttttcttgaggtggtattttaccctgaaaccc 741
Query: 174 agactggaacgaaaggggatcctcctt-ctgtttctgtttcgtacctctggaatgttggg 232
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 740 agactggaacgaaaggcgatcctccttcctgtttctgtttcgtgcctctggaatgttggg 681
Query: 233 attaccatagtgagaagccacacccatagctcagtatttaccaaataaaactcccacccc 292
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attaccagagtgagaagccacacccatagctcagtatttaccaaataaaactcccacccc 621
Query: 293 aattctgtcaactggtggacagacatcaagagaggcttttcacaggactgtttagaatgt 352
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 aattctgtcaactggtggacagacatcaagagaggcttttcacaggagtgtttagaatgt 561
Query: 353 gtcagggcttacagtctaggacacacacccaaataaccagtgaggtttggagagcttgaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcagggcttacagtctaggacacacacccaaataaccagtgaggtttggagagcttgaa 501
Query: 413 ggctggttatccaagaaaacattttaaggggatgaagagaagg 455
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggctggttatccaagaaaacattttaaggggatgaagagaagg 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
