BAC Information

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BAC

Clone NameMSMg01-061N16
Chromosome14 (Build37)
Map Location 82,843,572 - 82,843,936
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061N16.T7 (MSMg01no061_n16.b1)MSMg01-061N16.TJ (MSMg01no061_n16.g1)
ACCAG287966AG287967
length729835
length of high quality
(start - end)
365 (72 - 436)121 (71 - 191)
definitionCHROMAT_FILE: MSMg01no061_n16.b1 PHD_FILE: MSMg01no061_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:57 2005CHROMAT_FILE: MSMg01no061_n16.g1 PHD_FILE: MSMg01no061_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCG
CGGAATTCATTGGGTATTCCGCTTTTTTAAAATGACCTAAATATTTGTCT
TTACCTTCAGCTTTAAGGATTTGAAAAGGCTTCACTTTTTCAAGGGAGCA
AAAAAAAGCAAAACAGCAACGAAGCCTGATCATTAACCTGAGTCAGTGAC
AAGACATCTGCTCTAAGTTCAGAATTTACCCAAGGAAAAGATGTCAATAA
GTAGTGATGAGTTCCACGGAGTGGGTGCAAAGCAGCAAATAGAACAATCA
CTCAAAATGACACATCTCAAACTCATAGAAATAAGAGATCCATGTCAACT
GGCAACTAACAACTTGTAGAAAATGGACTTTTAAACTCCTTAAAGTACCT
TTGTCCACAGACAATCCTCACTCCGACACAACAGGGACTTAGCGATGGTG
CAACAAAAGATGGACTTAGTGGACACAGTCAGAGAGTTCATAGTAAATAC
TAACCAAGCTTTTCTATTACTCATGTCCTTGTATTATTAAAATTAATCTA
AATTGACAGTTGATACTATGAAAACTATATATGATAAATATTAAGCTTAG
TAACCAGCTTATGAATTCAAATGTTTAACGAAAATTCCTTTCTCATTTTT
AACGACCTCTCGATGTCCATCCCTGATGTCTCCCTATTTTTAGCCATAGG
ATCAAACATTAACTACACTTATTTTATCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATACCCTGTTTTTTGATTGGGTTGTTTGT
TTTTTTGGTGATTAGCTTCTTGAGTTATTTACATATTTTGGATATTAACC
CTCTAGTGGATGCAGGGTTAGCGAAGGCTTTTTCCCAATCTGCCGATTGT
CCATTTGCCTTATTGACCCTGCCTTTGCCTCACAGATTTCCAGCTTCTTG
CCGCCCCTTTTATCTACACTTCCTTCTCATATTCTCCCTCTTCTACGCCC
CGCTCTTTACCCCTTCTTCTCCCCTTCCCCGTTCTTACTTCTTTTTCCCC
TTCTCGTCCTATTATTTTCCCCCCGTTCCCCCCCTTTTCCCCTTTTCCCC
TTTTTTTTTTTGTTGTTCTCCCACCCCCCCCCCTTTCTCCTTTTTTTCCC
CTTTTTCCCCCTTTATTATCTCTCTTTCTCCCCCTTTCTTCCTCTTCTTT
CACCCGCCTTCCCTCTCCCCTTTTCCCCTCCCCCCTTTTCCTTTTCCCCT
TTCTTTTCCTCCTCTCCCTTTCTTCTCCCTTCCCCTCCCCCTTCCCCTTT
TCCCACCTTTCTTCCTCCTCTTTTTCCTTTCTCTTCTTACCCCCCTTCTT
CCCCTTTCGATTCCTCCCTCCTTCCTCCTCTCCTTCTTCTCCCCTTCTTC
CCGTTTTCTTCCTTTCCTTCTTTTTCTCCTCCATTTCCCCTCCCTTTCTT
CTTTCCCTCCCCCTACTCTCTCCTCTCTCCTTTCCTTCCCGTTTCCCCTC
TCTTTTCCCTTCCCTCCTTTTCCGTCTCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_n16.b1 MSMg01no061_n16.b1 CHROMAT_FILE:
MSMg01no061_n16.b1 PHD_FILE: MSMg01no061_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:57 2005
         (365 letters)



>mm_chr14_82843372_82844136
          Length = 765

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttttaaaatgacctaaatatttgtctttaccttcagctttaaggatttgaaaaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttttaaaatgacctaaatatttgtctttaccttcagctttaaggatttgaaaaggct 260

                                                                       
Query: 61  tcactttttcaagggagcaaaaaaaagcaaaacagcaacgaagcctgatcattaacctga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactttttcaagggagaaaaaaaaagcaaaacagcaacgaagcctgatcattaacctga 320

                                                                       
Query: 121 gtcagtgacaagacatctgctctaagttcagaatttacccaaggaaaagatgtcaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagtgacaagacatctgctctaagttcagaatttacccaaggaaaagatgtcaataag 380

                                                                       
Query: 181 tagtgatgagttccacggagtgggtgcaaagcagcaaatagaacaatcactcaaaatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtgatgagttccacggagtgggtgcaaagcagcaaatagaacaatcactcaaaatgac 440

                                                                       
Query: 241 acatctcaaactcatagaaataagagatccatgtcaactggcaactaacaacttgtagaa 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatctcaaactcaaagaaataagagatccatgtcaactggcaactaacaacttgtagaa 500

                                                                       
Query: 301 aatggacttttaaactccttaaagtacctttgtccacagacaatcctcactccgacacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aatggacttttaaactccttaaagtacctttgtccacagacaatcctcactctgacacaa 560

                
Query: 361 caggg 365
           |||||
Sbjct: 561 caggg 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)