BAC Information

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BAC

Clone NameMSMg01-062B04
Chromosome14 (Build37)
Map Location 33,033,524 - 33,034,309
singlet/doubletsinglet
Overlap geneParg
Upstream geneSema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23
Downstream geneLOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062B04.T7 (MSMg01no062_b04.b1)MSMg01-062B04.TJ (MSMg01no062_b04.g1)
ACCAG288133AG288134
length1,1141,111
length of high quality
(start - end)		767 (90 - 856)785 (87 - 871)
definitionCHROMAT_FILE: MSMg01no062_b04.b1 PHD_FILE: MSMg01no062_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:17 2005CHROMAT_FILE: MSMg01no062_b04.g1 PHD_FILE: MSMg01no062_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCCCTNTNNNNTACATTGGGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCTTCTCCTTTGAAACTCTTATAAGCCCCTAGGTCCCCAAAG
TTCAAATCACCCTCACCTTCAAAGTCTTCCATATCCCTACTAGAGTGGCC
CATTAAGCCTCACTTACAGCATTCCATTGCTTCCCAAACCCAAAGTCTTC
AAATCCACATTCCTCCAAACAAAATCATGGTCAGGCCTATCACAGCAATA
CCCCAGAGTCCTAAAGCCCATATTCCTCCAGACAAAAGCATGCCAGGCTT
CTCACAGGAATACCCCACTTCTGGTACCAACTTCTGTCTTAGGGTTTCCA
CTGCTGTGAAGAGACACCATGACCAAGGCAATTCTTATAAAGGACAACAT
TAATAGGGGCTGCCTTATGAAAAAGTCAGCTTAGGAACTTTGGGAAGGTC
ATGAAACACTTGCTCCTCTGGAAGGGAGAGGCCAATTATCATTTCTCAGA
CCACAGGGCAAGAACTGTCCTGTGGGTGGGGACACATTCTACAAGACTGA
CTAGCCCACCTTCAGACAAGGGAAGTCCCATTCCCTAAAGACCAATCAGT
TTAAAGGGTGTACTGTTTCACCAATCATATTGTGTCTAGTTGCTGATGTT
CTATTCTGCCCCTGGAAACCATATAAAACTCACCGAACGGGTGCTGGGGG
TCATGCTTCTCCTTAGGGTCTGGGACGACCCCAGTGCACTGGAACAATAA
ATTCCTCTTGCTTTTTGCATCGATCTTGGCTCCACATGGTTCACTCAGGG
GGTCCCAGGTAAGCTAAGATTGCCAAGTCTTACAGTTTCAGAGGTTCAGT
CCATTATCATGGCAGGAAGCATGTCAGCATCCAGGCAGACATGGTACTGG
AGAAGGAGCTGAGCGTTCTATATCTTGACCTGACTGCTGCCAGGAGAGAA
CTGTCTCTTCCTTACTGAATGAAGCCTGAGCATAGAAGGAGACCTCCAAG
CCTACCCCCACAGTGACACACTTCCTCCAAAAGGCTACATCTCCTAACAG
GGCTAATCCCTAGGGGCCCAAGCTAATCCAACCCCTAACTGAAGCCTCCT
TCATTTCCTGGGGC

CGATCATTNNNNAATCAGGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAATGTCCTAG
ATGTCCTGCCTGAGCAGGACTCCCCAGAGCCATATTTTCCTAGGCCCACC
CTGGGTAGTTTTCAAATACTACTGTAACTTCTGGTGAAGGGGGCCAGGCT
GCTTTTTAGCTAGGTATGTAAGTTGAGTCTTTTCTACATGGAGCTACTTT
TGCAGGCATGCAGGATGCAAACGTTAGATTGTTGAGTAGAGATCCATGAA
GGTTCCAGAAAACCTGTTGAGTCAGCAGCAGATAGCAGTCATATTTTCTG
TGTGGAGGTCCTAAGCAGCCTGTGTGTAAAGATGTAAAGTAAAGCTCAAC
TTGTAGTGGAGCTATGTCATAGATACCAGAAATGTGTGACACCCACCTAG
GAAAGCTGTTGGTACTGAGTGTGATTCCATAGTGGTTAGAGTCAAAGCCT
AGGCCCTGGTAGTGCTGACAACCCAGATATGGCCACCTATCTTCAGTAGG
CTAGTTTCAGAGAAAAGTAACAGTATATATTCAGTAAAGCTACACCAGGA
GGAGAAACTAATAGAAGTTCAGTGACTTTTTGTCCCTTAAGGACATCTTC
AGAATCCTGATAGGAGGTTTTGGTTTAAATAGAGGTCAAGCGATATGCAT
AATTAAGCAATCTGGTTAGGAAACAAGTATAGGACCTCTGTAGGAGCAGC
AAGCAGCCTGCTGGGCTGAGAATTTTATATACTTATACATGTGCTTGATA
CATGACCCATTTTTAAATGTGTTTTTATTTTTGAAACAGGGTCTCACTGT
GTATTTCTGGCTGTTCTAGAACTCACTACATAGACCAAGCTTGCCTCCAA
CTTGTAGAGATCCACCTGTCTGTCTCTGCCTGAGTGCTGGGGTTAAAGAC
ACGTGCCAATGTACAGGCTTTACATACTCATTTTACATTAACTTTTGCAA
AATATTATGTGAGTAATGGGCCTAAGTTTTATTATACTCCTAAATTTAAA
AAAATAATTTACGGGGCTTGTATGGGGCATGTCTGGAAAACCTTTCTACG
GAAACAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_b04.g1 MSMg01no062_b04.g1 CHROMAT_FILE:
MSMg01no062_b04.g1 PHD_FILE: MSMg01no062_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:17 2005
         (785 letters)



>mm_chr14_33033325_33034509
          Length = 1185

 Score = 1489 bits (770), Expect = 0.0
 Identities = 782/786 (99%), Gaps = 1/786 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaatgtcctagatgtcctgcctgagcaggactccccagagccatattttcctaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agaaaatgtcctagatgtcctgcctgagcaggactccccagagccatattttcctaggcc 259

                                                                       
Query: 61  caccctgggtagttttcaaatactactgtaacttctggtgaagggggccaggctgctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caccctgggtagttttcaaatactactgtaacttctggtgaagggggccaggctgctttt 319

                                                                       
Query: 121 tagctaggtatgtaagttgagtcttttctacatggagctacttttgcaggcatgcaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagctaggtatgtaagttgagtcttttctacatggagctacttttgcaggcatgcaggat 379

                                                                       
Query: 181 gcaaacgttagattgttgagtagagatccatgaaggttccagaaaacctgttgagtcagc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcaaacgctagattgttgagtagagatccatgaaggttccagaaaacctgttgagtcagc 439

                                                                       
Query: 241 agcagatagcagtcatattttctgtgtggaggtcctaagcagcctgtgtgtaaagatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agcagatagcagtcatattttctgtgtggaggtcctaagcagcctgtgtgtaaagatgta 499

                                                                       
Query: 301 aa-gtaaagctcaacttgtagtggagctatgtcatagataccagaaatgtgtgacaccca 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagtaaagctcaacttgtagtggagctatgtcatagataccagaaatgtgtgacaccca 559

                                                                       
Query: 360 cctaggaaagctgttggtactgagtgtgattccatagtggttagagtcaaagcctaggcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctaggaaagctgttggtactgagtgtgattccatagtggttagagtcaaagcctaggcc 619

                                                                       
Query: 420 ctggtagtgctgacaacccagatatggccacctatcttcagtaggctagtttcagagaaa 479
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctggtagcgctgacaacccagatatggccacctatcttcagtaggctagtttcagagaaa 679

                                                                       
Query: 480 agtaacagtatatattcagtaaagctacaccaggaggagaaactaatagaagttcagtga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtaacagtatatattcagtaaagctacaccaggaggagaaactaatagaagttcagtga 739

                                                                       
Query: 540 ctttttgtcccttaaggacatcttcagaatcctgataggaggttttggtttaaatagagg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctttttgtcccttaaggacatcttcagaatcctgataggaggttttggtttaaatagagg 799

                                                                       
Query: 600 tcaagcgatatgcataattaagcaatctggttaggaaacaagtataggacctctgtagga 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcaagcgatatgcataattaagcaatctggttaggaaacaagtataggacctctgtagga 859

                                                                       
Query: 660 gcagcaagcagcctgctgggctgagaattttatatacttatacatgtgcttgatacatga 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gcagcaagcagcctgctgggctgagaattttatatacttatacatgtgcttgatacatga 919

                                                                       
Query: 720 cccatttttaaatgtgtttttatttttgaaacagggtctcactgtgtatttctggctgtt 779
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 cccattttaaaatgtgtttttatttttgaaacagggtctcactgtgtatttctggctgtt 979

                 
Query: 780 ctagaa 785
           ||||||
Sbjct: 980 ctagaa 985


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1185
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1175
Effective search space:   910625
Effective search space used:   910625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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