BAC Information

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BAC

Clone NameMSMg01-063B20
Chromosome14 (Build37)
Map Location 101,713,954 - 101,714,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421
Downstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B20.T7 (MSMg01no063_b20.b1)MSMg01-063B20.TJ (MSMg01no063_b20.g1)
ACCAG288930AG288931
length753923
length of high quality
(start - end)
312 (113 - 424)40 (143 - 182)
definitionCHROMAT_FILE: MSMg01no063_b20.b1 PHD_FILE: MSMg01no063_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:20 2005CHROMAT_FILE: MSMg01no063_b20.g1 PHD_FILE: MSMg01no063_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNAATAANNNNNNNNTTNNTT
TTATAAAANNNNTTTATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTCCATACTGCCTGTTATAGAAACATCTA
GAAGGGTAGTCTACATGTTTATGTAGCATAAAAGTAAAAGCAAGAGCATT
AGAGACTATTTATGTAAAAATGAAGTTAAAATTAAAGACAATGCACAGGA
TGAATCGAAGGAAAATGAAAGCACAGTAGATTTGGATGCATCTCTTCTAT
CTCTTTTTTATTGGTGGGATGAGTTTTGGACTTCTTCAAACATCTGTGTC
AGCTAGGCTTCATGCCGCATCACTTTAGTCCCAGCAATTGGGAGGCTCGA
GCAGGAGAACTGATATGACTTCATGGTTTTCTGCCTCCCCCTCGCGGGTA
CAAGACTAACCTCAGCCACACCATGACACCCTGACACAGAACAAACAAGG
AAGTAAACGCAGGAGCAAATAATACCCTAATCCTCTAAACTCTTATACTT
CAGTTCCTCACTGTACTGCCTAAACCTATCCCGGTTCTCTATGCCCAAGT
GTAACCAGACTTTATTCCTGCCTTTGTATCTCTTTAGTCTTCATTTGTTC
CGCGTTTCCAGCTGCGTGTAGGAGGGGCATTGCCTCCTGCCCGCCCATAC
ATGTCACCATCCGTACAATAGTTTGAGGATTCCTGCCTGACAATTACCCA
TTT
NNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTCTCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGA
AAGCAGGAGTAAGTGGGTTGGTGAGCAGGGGGAGGCGGGAAGGCATATAC
CTCCTTCCCCTCCCTTCCTCCCCCCCTTCCCTCCCCCTTTCCCCCTTCTC
CTTTCCCTTCCCTCTCCTCCCTCTCCCCTTCCTCCCCTCTCTTCCCCCTC
TCCTTCTTCTCCTCCCCTCCTCTCTTTCCTCCCCCCTCCTTCCCTCCTCT
CCTCTCCCTCCCTCCCTCCCCCTCTTCCCTCTTTTCCTTCTTCCCTTCCC
CTCTTTCTTTTTTTCCTCTCTCCTCCCTTCTTCTTCCCTTTTCCCTTCTC
TTTTTTTTTTTTTTCTCCCCCCCCCCCCCTTTCTCTTTCCTTTCTTTTTC
TCCTTCTCCTCTCTTTTTCCCTCCCCTTCCCCCCTTCCCTCCTCTCTCTC
CTCTTCTTCCTCTTTCCGTTCCTCCTTCTCCCCCCTCCTTCTCCTCTCCC
CCTATCCTTCTTTTATCTCTTCTATCATTCTCCCCGCCCTCTCTTCTTCT
CCTCCTCTTCTCTCCCCTTCCTTTCCTCCTTTTCTCTCTCCCTTCCTCCT
CTCCTTCTTGTTCTCTCTCTCTTCTTCTCCTTCCCCACCTCCTTCCCTCC
CTCCCTCCCTCTTTTTCTCCTCATTTATACGCCTCTCCTTTCCTTCTCTT
CTTCCTATGTCGTTCTTTTTCCTTCTTTCCCCCCTCTTTCTTTCCCTCCC
CATCTTTTTCTCTCTTCTCCTCTCCTCCCCTCCTTTTTTCTCTTTTTTCT
CTCTCTCTTGTCTCCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b20.b1 MSMg01no063_b20.b1 CHROMAT_FILE:
MSMg01no063_b20.b1 PHD_FILE: MSMg01no063_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:20 2005
         (312 letters)



>mm_chr14_101713750_101714461
          Length = 712

 Score =  503 bits (260), Expect = e-147
 Identities = 296/310 (95%), Gaps = 6/310 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccatactgcctgttatagaaacatctagaagggtagtctacatgtttatgtag 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattctccatactgcctgttacagaaacatctagaagggtagtctacatgtttatgtag 452

                                                                       
Query: 65  cataaaagtaaaagcaagagcattagagactatttatgtaaaaatgaagttaaaattaaa 124
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 451 cataaaagtgaaagcaagagcattagcgactatttatgtaaaaatgaagttaaaattaaa 392

                                                                       
Query: 125 gacaatgcacaggatgaatcgaaggaaaatgaaagcacagtagatttggatgcatctctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gacaatgcacaggatgaatcgaaggaaaatgaaagcacagtagatttggatgcatctctt 332

                                                                       
Query: 185 ctatctcttttttattggt---gggatgagttttggacttcttcaaacatctgtgtcagc 241
           |||||||||||||||| ||     ||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctatctcttttttatt-gtcaa--gatgagttttggacttcttcaaacatctgtgtcagc 275

                                                                       
Query: 242 taggcttcatgccgcatcactttagtcccagcaattgggaggctcgagcaggagaactga 301
            |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| 
Sbjct: 274 caggcttcatgccacatcactttagtcccagcatttgggaggctcaagcaggagaactgt 215

                     
Query: 302 tatgacttca 311
           ||||||||||
Sbjct: 214 tatgacttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)