BAC Information

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BAC

Clone NameMSMg01-063K16
Chromosome14 (Build37)
Map Location 65,705,805 - 65,706,279
singlet/doubletsinglet
Overlap genenone
Upstream gene1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063K16.T7 (MSMg01no063_k16.b1)MSMg01-063K16.TJ (MSMg01no063_k16.g1)
ACCAG289346AG289347
length694675
length of high quality
(start - end)
475 (41 - 515)288 (56 - 343)
definitionCHROMAT_FILE: MSMg01no063_k16.b1 PHD_FILE: MSMg01no063_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:07 2005CHROMAT_FILE: MSMg01no063_k16.g1 PHD_FILE: MSMg01no063_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCTTCCATATTCCTAACTTCCACTTAGTACAGAGGACAGATGGCTCTGGG
TCCCTTCCTCTTTGCCCGCTCCTGGTCTTCTAGCTTTGACCAGACAGCTT
ATAGGAGATGTGGTGAGCTAAGAGGTAACTGAGTTCTACCCACCTGTCAC
CATTACTAGTGAATGCTGATAAGTAGAAGCCTGGATTCTGTTCCTTGGAA
ATGTATGATCCTCTTCCTAGTAAACAATGATTTAGTAAATAGCAAGACAT
TCTTTCTAACTGAGCACATGGAAACACGCCCTGGCTCTATGCAGAAATGC
TCAGGAATGCCTTGATCGTTATGGAAACTAGAAGCATCTGCCTGGTGCTT
ACCTAGCACACAGAAGGGCTGCACTAGTGCAAGGTCTTTTCCTGTGGGTG
GGTATTCAACTACTAATGCCTGTGTGGGGGTAATGTTTTAACTGCTAGTG
CTTTTGTGGTAGGATATCTCAGGGTAGGATAACAGGGCTTTTGCTTTCTC
TTTCCTCACTCTTACTGACCGTTACTTCGCTGTGTACCTTACCGGTGCCC
TTGAATTTTTTTACCTTCATCATCACTTCATCGCTCAATCCCCCTTTTGC
TTTCTCTTCACCCAACCAACCACTTGCTCACTACCCCCTTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTACCTGCCCTCACCTGTGCTGCCTCATGTGCCTGCGCTGCAGTC
AGCTCCCCAGCACACAGCATCATGTTCTGCAGTGCCCGTGCACACTGCCT
GTATCACCTCCACCCCAGACGGCTGCACGTCATGAACTGCAATCCTTTGA
CTATACATATAGGATTTTTCATTCTTATGAAAACATAATGGTTAAATTAC
AGAGAACAAAGACTTAATATTTTCCTGCCACACTTAGGGACAATTATGAG
ATTCGTACATTAGTGAAGTTAGTAAATCTGGGTGTATCTTTATATTGCAT
TTTCGCCACAATATTTGATTTTAAAAATTGCTATTTCCAGCCATACAGTG
GTGACACATACCGTTAGTCCCAGCACTTAGGAGGCAGAGACAGGCAGATC
TCTGTGAGTTCAAAACCAGCCTGGTCTACAGAGAGAATTCTAGGAAGTCA
GGGCTGTTACACAGAGAAACAAGTAGAGTGCCTCACAGGATAAAGGTACT
TGCTACCAAAGCTGATGACCTGGGTTTGATCTCAAGGGCCCGCCTGGTGG
AAAGAAAGAGTCCACTCCTGAAAGCTACTCTTTGACCCCATGAATGCCAT
GATGGCATAAGCCACCCCCTGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_k16.b1 MSMg01no063_k16.b1 CHROMAT_FILE:
MSMg01no063_k16.b1 PHD_FILE: MSMg01no063_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:07 2005
         (475 letters)



>mm_chr14_65705599_65706479
          Length = 881

 Score =  830 bits (429), Expect = 0.0
 Identities = 461/475 (97%), Gaps = 6/475 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttccatattcctaacttccacttagtacagaggacagatggctctgggtccctt 66
           ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 gaattcttccatactcttaacttccacttagtacggaggacagatggctctgggtccctt 622

                                                                       
Query: 67  cctctttgcccgctcctggtcttctagctttgaccagacagcttataggagatgtggtga 126
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctctgtgcccggtcctggtcttctagctttgaccagacagcttataggagatgtggtga 562

                                                                       
Query: 127 gctaagaggtaactgagttctacccacctgtcaccattactagtgaatgctgataagtag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 gctaagaggtaactgagttctacccacctgtcaccattactagtgaatgttgataagtag 502

                                                                       
Query: 187 aagcctggattctgttccttggaaatgtatgatcctcttcctagtaaacaatgatttagt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcctggattctgttccttggaaatgtatgatcctcttcctagtaaacaatgatttagt 442

                                                                       
Query: 247 aaatagcaagacattctttctaactga------gcacatggaaacacgccctggctctat 300
           |||||||||||||||||||||||||||      |||||||||||||||||||||||||||
Sbjct: 441 aaatagcaagacattctttctaactgagcagctgcacatggaaacacgccctggctctat 382

                                                                       
Query: 301 gcagaaatgctcaggaatgccttgatcgttatggaaactagaagcatctgcctggtgctt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaaatgctcaggaaggccttgatcgttatggaaactagaagcatctgcctggtgctt 322

                                                                       
Query: 361 acctagcacacagaagggctgcactagtgcaaggtcttttcctgtgggtgggtattcaac 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 acctagcacacagaagggctgcactagtgcaaggccttttcctgtgggtgggtattcaac 262

                                                                  
Query: 421 tactaatgcctgtgtgggggtaatgttttaactgctagtgcttttgtggtaggat 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactaatgcctgtgtgggggtaatgttttaactgctagtgcttttgtggtaggat 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 881
Length adjustment: 10
Effective length of query: 465
Effective length of database: 871
Effective search space:   405015
Effective search space used:   405015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)