NNGGGACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTGAGATGAGATTGTAACACAAAATCACAGACAGGACAGAGCCAGT
CACCCACAGGTTCCTCCATGACTTGTCCCTAACCCATCTACTGCAGAAGT
CAACACCTGCAGTGACAAATTGTGGTTACTTCCAAATGTGACTCAGAAGA
TACTGGTGGTAAGTTGTGGGCTCAACATGTTGCCTCTTGAGTGGCAACTC
CTCCTCCACACTAGAGTTAAAGAGCAAAGGCTCTGTAAGCAAAAGTGATT
TAACAAAACAGATTTTATGGTATAATAGGAAAGAGAAAGAAATGAGCCTA
CAGAGGAAAATAGATATAAGCAGCACATGCGATCTGCCTGTTTCCAGACA
AAAGCAACCTGGTCCAGAGCTCAGGTCTGACAAGCAAACAGTGAAATCTA
GACATGATTTCTTTGCCCCGCTGTGGATAAATAATCCTCTATTCTCAACA
GTGAAGGTTCCCAATCCCTGCCTTATCTACACCATATCCTGTTCTACATA
CTGAGAAAATGTGTCTTTAGCTTGCTATACCAGTCTACTTGATATAGCTA
GAAGCTATTTCTATAGGAATATTATTCTAAACTGATGAAATTCTGGATCT
TTTGCTAGAAAAAAATTGAAAATATTTGTGGCCAACAGTTGTTTCCAATG
AAGTCCTGGGCAAGTACCAAGAATGACCTAAAGGGAAAACCAATGTTTGC
CATGTAAATGATGGAAGCAGTCACTTGGATCAAAGGTGCACTGATAGCAA
CAGTGCAGGTATCTCTAAAACTGAGGGCTGTGCACTGATTACTGATATTT
AAACTAAAGATCAGACCCAAACTAATCAGTCCCCCCCCCCCCACCCCCTG
AGTTCCCCGGGGATAAATCACCAACCAAAGATAAAAATGGTGGGAAGCAT
GGCTTACGTTTCTTATGTAATTGGAAGAAGAGCCAATTGGTCCTCAATTG
GGAAAAAAAGACCTTGGTCCTTGGGAAAACTCATTCCCCCATGTTGGGGA
AAGTCCCGAACACAAAACCCCTGTTGTTGTTTTTTTTATANNNNNCTNCT
TTTTTTTCTCTCTCTATTTCTCTTATTCACTCTTGTCTCTTCTCTTTTAT
ATTCATCTCTCATTTTCTTCTNTTTAATNCTCTCTTCTTATATCTTTATN
CTTATTTCTCTTTTTTTTTAATTTNCCATTCTTTATTTTCCTTCTTATTA
TTCTATTGNCCTCTTT

NNNAATTGAGGGNAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCATAGGTGATAAATAGTCAAGGTACTTAA
AAAGGATTTTCCATATCAGGGATGTGTGCCATAGCTGTGTAACAGGTTTA
TTCATCCCTGCACAGAGATTGGGCAGGTGATGCCCCAGATTCCATAGGAG
CATCAATTAACTCCAGCAAAAGTGTGATGGGAATGCTATATACTTGCGAC
CTGTCTGGGGTTGGAAAGTCACTCCCTTTCTGGTTTTCTGCCATCATATG
CTCTGTACCCAGCAGCCACTGCCTCTAATATATTGCTGGTATAGGATTTC
TGACTATTTTCCTAGAAATCAACAAATGAATAGCTTGGGACAGTAGTGAA
GAACACTAGAGATCACATTTCTCATGTACCAAAATAATCAATAATTATTT
TTTTTTTTCCCCCCCCCGTGACCTTTACTATTGCTTTAAAAAAAAGAGGA
AGTCAAAGTTTCTCCTCTGAAAATTTGTGAACCAAAGTCTATTTTTGGGC
TGCCCCCCCTTTAAAGACAGTAATATGAAATGAGTGCTTTATGAAAAGTC
TTTCATTTTCTCTCCAGCTATGACAATAGTCCATATTGTAATGTTGGATT
CACTAAGATCATAGTTCTCAGGTGATGTAGGTTTGAAATAATTGTCCTCT
ACTTTATTTTTCAGAGGTTTTTTTTTTCCTCCTCAAAGGCAACAATGTTT
GTCCTATAAAATTGCCCAGTGAATAAATATTCTTGTGCTTTTGCAAATGA
ACTTGGTGATTAATTTTAAATTACCTTTTGGATTTTGACTTTGTCCTTTC
TCCCTTACTTGTTCTCTGTTATTTTTATTTTACCCTTATTGTTCCACCTT
TTTTTTTTTAGACGGTTTCTATTTATTTTTCTTATTTCTTTTTCTCTCCT
TATAATCGTCTGTTATTTATATTTTTTCTTCCCTCTCTTATTTTTTTTAT
CTTTTTCCTTTTCTTATATTTAATACTTTCTTTATTATTTTTTTTTTATT
ATTTTCTTTTTTTTTCTTCTTCTTTTTTTCCCTCTTTTTATTTTTTATTT
ATATTTTTTCTTCTTATATTTTTTATTTTTTTTTTCTTGTTTTTTCTTTC
TTTTCTCTTATTCTTTTTCCATTCATATTTTTTTTTT

Query= MSMg01no064_a18.b1 MSMg01no064_a18.b1 CHROMAT_FILE:
MSMg01no064_a18.b1 PHD_FILE: MSMg01no064_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:40 2005
         (415 letters)



>mm_chr14_38606974_38607788
          Length = 815

 Score =  717 bits (371), Expect = 0.0
 Identities = 401/411 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtgagatgagattgtaacacaaaatcacagacaggacagagccagtcaccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaattccagtgagatgagattgtaacacaaaatcacagacaggacagagccagtcaccca 556

                                                                       
Query: 65  caggttcctccatgacttgtccctaacccatctactgcagaagtcaacacctgcagtgac 124
           ||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 555 caggttcctccgtgactcgtccctaatccatctaatgcagaagtcaacacctgcagtgac 496

                                                                       
Query: 125 aaattgtggttacttccaaatgtgactcagaagatactggtggtaagttgtgggctcaac 184
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 495 aaattgtggttgcttccaaatgtgactaagaagatactggtggtaagttgtgggctcaac 436

                                                                       
Query: 185 atgttgcctcttgagtggcaactcctcctccacactagagttaaagagcaaaggctctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgttgcctcttgagtggcaactcctcctccacactagagttaaagagcaaaggctctgt 376

                                                                       
Query: 245 aagcaaaagtgatttaacaaaacagattttatggtataataggaaagagaaagaaatgag 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 375 aagcaaaggtgatttaacaaaacagattttatggtataataggaaagaggaagaaatgag 316

                                                                       
Query: 305 cctacagaggaaaatagatataagcagcacatgcgatctgcctgtttccagacaaaagca 364
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 315 cctacagaggaaaatagatataagcagcacacgtgatctgcctgtttccagacaaaagca 256

                                                              
Query: 365 acctggtccagagctcaggtctgacaagcaaacagtgaaatctagacatga 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acctggtccagagctcaggtctgacaagcaaacagtgaaatctagacatga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no064_a18.g1 MSMg01no064_a18.g1 CHROMAT_FILE:
MSMg01no064_a18.g1 PHD_FILE: MSMg01no064_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:41 2005
         (389 letters)



>mm_chr14_38533621_38534409
          Length = 789

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcataggtgataaatagtcaaggtacttaaaaaggattttccatatcagggatgtgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcataggtgataaatagtcaaggtacttaaaaaggattttccatatcagggatgtgtgc 260

                                                                       
Query: 61  catagctgtgtaacaggtttattcatccctgcacagagattgggcaggtgatgccccaga 120
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aatagctgtgtaacaggtttattcatccctgcacagagtttgggcaggtgatgccccaga 320

                                                                       
Query: 121 ttccataggagcatcaattaactccagcaaaagtgtgatgggaatgctatatacttgcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccataggagcatcaattaactccagcaaaagtgtgatgggaatgctatatacttgcga 380

                                                                       
Query: 181 cctgtctggggttggaaagtcactccctttctggttttctgccatcatatgctctgtacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtctggggttggaaagtcactccctttctggttttctgccatcatatgctctgtacc 440

                                                                       
Query: 241 cagcagccactgcctctaatatattgctggtataggatttctgactattttcctagaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcagccactgcctctaatatattgctggtataggatttctgactattttcctagaaat 500

                                                                       
Query: 301 caacaaatgaatagcttgggacagtagtgaagaacactagagatcacatttctcatgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacaaatgaatagcttgggacagtagtgaagaacactagagatcacatttctcatgtac 560

                                 
Query: 361 caaaataatcaataattatttt 382
           ||||||||||||||||||||||
Sbjct: 561 caaaataatcaataattatttt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)