BAC Information

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BAC

Clone NameMSMg01-064B03
Chromosome14 (Build37)
Map Location 90,274,191 - 90,274,463
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064B03.T7 (MSMg01no064_b03.b1)MSMg01-064B03.TJ (MSMg01no064_b03.g1)
ACCAG289646AG289647
length1,191718
length of high quality
(start - end)
423 (30 - 452)281 (82 - 362)
definitionCHROMAT_FILE: MSMg01no064_b03.b1 PHD_FILE: MSMg01no064_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:43 2005CHROMAT_FILE: MSMg01no064_b03.g1 PHD_FILE: MSMg01no064_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGTCTGTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTGTTCGATTTTCTGAA
GTTCACCTTCTTGAGTTCTTTATATATGCCCCATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCAAATCTGTTGGTGGTCTTTTTGTC
TTATTGAGGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCACGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCCACTT
TGATTTGATCTTAGTACAAGGAGATAAGTATGGATCAATTCGCATTCTTT
TTTTTGCCCCCCCCCCAGTTGTGACAGCACCAATTGATGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTTTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTAAAGCTTTAAGTGAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAGAAGAGTTTTTGCTCTCCTAGGTTTTTTGTTATTCCAGATGAATTTG
CAAATTGCTCCTTCTGATTCGTTGAAAAATTGAGTTGGAACTTTGATGGT
TATTGCTTTGTATCTGTAAATTTCTTTTTTCTAGATTTCCCTTTTTTTAA
TGCTTGTTTCTGTCTTTTCTTGAATTATGTTACGATTTCTTCTTTATCTT
TATATTTTCCTTTTATTTTCTTCTCTTCTATATTTTTATTTCTTCTCTTT
CTCTCTCTTTTTTTTTCCTTCTCTTCTTCTCTATCTTCTTATCTTTTCTA
TTTCTCCTTTTATTTTTTCTTTCTAATTCTCTTCTTCTCTCCTTTTTATT
CTCTTTTCTTTCCCTCTTTTTTTTTTCTTCCTTCTCTCTCTTTCTTTCTC
TTCTTCTTCTCTTCTTCTTACTACTTTTTCTTTATTTTCTCTTCTTCCTC
TCTTCATCTCTTTTTTCCTTCTTCATTTTCTTTCTCTCTTT
NTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGGGACTCTTCTGGC
TCATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATATAAAGTATTACTTTATATACTCATATACAGTCATATGATATTT
TTGCAGTGTGGGGAAGGGTGTTCACATAGTCTGACGTAAGGTGTCAGGAG
TAAAAAACCTCTCAAAATTTTAGTGTGATATCCTGTCTTTGTGAGTTAAA
ACATAGTTATGGACCCATGTTATGGAAAGATAGAATCTATTTCATAAAGC
TTTTCTCTGATATCTGTAAAAATGCCACCCCCCGCAAAAAATTAAACATT
TCTCTTTGTAGACTTCACTGCCCTTTTTTTTTTTTTTTTTACATAGACCA
ACGTTGAAAAATTTCTAATACAAGTTAAAATTAAGGGATCACTATTTTAT
ATTGATTATTTTATTTATTTACGTTTCAAATGTTATTCCTCTTCCCAAAT
TTCCTTCTGCAAACCCTTTATCCCATTGAAACATAAAATCCTTTAAAAGC
ACTGTTAGGAACAATATTGGCAACTGATAGTATATGATGATATAGAATCA
TAATATGACCATTAAAAGTAAATATTTTAAGCAGTTTAATCAAAAAATAA
TCAATGTTTCTTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_b03.g1 MSMg01no064_b03.g1 CHROMAT_FILE:
MSMg01no064_b03.g1 PHD_FILE: MSMg01no064_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:43 2005
         (281 letters)



>mm_chr14_90273983_90274663
          Length = 681

 Score =  501 bits (259), Expect = e-146
 Identities = 272/281 (96%), Gaps = 8/281 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatgggactcttctggctcataaataaataaataaataaataaataaataaataaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 caaatgggactcttctggctcataaataaataaataaataaataaataaataaataaata 268

                                                                       
Query: 61  aataaataaataaatataaagtattactttatatactcatatacagtcatatgatatttt 120
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aataaata--------taaagtattactttatatactcatatacagtcatatgatatttt 320

                                                                       
Query: 121 tgcagtgtggggaagggtgttcacatagtctgacgtaaggtgtcaggagtaaaaaacctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tgcagtgtggggaagggtgttcacatagtctgacgtaaggtgtcaggagtaagaaacctc 380

                                                                       
Query: 181 tcaaaattttagtgtgatatcctgtctttgtgagttaaaacatagttatggacccatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaattttagtgtgatatcctgtctttgtgagttaaaacatagttatggacccatgtt 440

                                                    
Query: 241 atggaaagatagaatctatttcataaagcttttctctgata 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggaaagatagaatctatttcataaagcttttctctgata 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)