BAC Information

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BAC

Clone NameMSMg01-064J05
Chromosome14 (Build37)
Map Location 56,335,250 - 56,335,655
singlet/doubletsinglet
Overlap geneRabggta
Upstream geneSlc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1
Downstream geneDhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J05.T7 (MSMg01no064_j05.b1)MSMg01-064J05.TJ (MSMg01no064_j05.g1)
ACCAG290008AG290009
length1,257730
length of high quality
(start - end)		412 (43 - 454)113 (120 - 232)
definitionCHROMAT_FILE: MSMg01no064_j05.b1 PHD_FILE: MSMg01no064_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:37 2005CHROMAT_FILE: MSMg01no064_j05.g1 PHD_FILE: MSMg01no064_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCTATGCGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGATCCCTCTTGAAATCGGAGGGTTAGAGCATCTTTGATCCACATT
TCCACATATCCACTTATAAATACTAAGAGCCCCCTTGAGAGCCCTCTCCA
CCTCTATGCCTGCACAAGGTCCTGCTTCCCATAGTCCCCTCTTCAGCTAG
GCATTCTACAGTCTGTAAGAAACCATCAGACTTGCTTCCAAGCAGCAGTT
TCCAGCTCTGGAGTGTCCAGTAGCAGACAGTGGGTGGGGTAGAACTATTG
AGCTTTCCTTGACTCCACCGCCCAAGGCCTCCAGCAGTCTGCTGCACTTC
AGACTCTTGCCTCCTGCCCCAGGCTAGTCTTCCTCAACCTGCAGGGCAAC
TCTTTGTGCCAAGAAGAGGGCATCCGGGAGTGTTTGGCTGAGATGCTACC
GTTTTTTTTCCCCCCCCCCCCCTAGGAGGCCCCATCTCACCCAAAAACTT
TAACTTATTGGGACTGAATAAAGACTGGAGAGGCCCCTCTAGGCTGCCAA
GCTACCATTACTGCTGCCCTGACAACACTTCCTCCATTACCACCACTGTG
CATTTTGGAAAAAGGAAGGGAGGGGCTCTCTGGGGTATGGGGCCACTGTC
CTGTGATACTGTCTACCAAGACCCTCAGTGTTTTATGGCTGGTCAGGACC
AGGGCTGGGTCTGAGTTCACCATCAGTTTTGGGCTATCGTGTTGCCTGAG
CTTGAAGCTGGGATAGGAATTAGGATCAGGTTGTGTTTTGCATTGCTCAT
CAAAAAAACTGTCTTGGGTCTGTAAAAATGGCTCAATCATTTAAGAGCAC
CGACTGTTCTTCTGAAAGTCTTGGAATTCAATCCCCCCCACCCCCATGGG
GTCTTATAAACCTTCTGTTATATAAACCTGAATCCCCCCTTTCTGGGTCT
GAATAACATTTACAGGTGTTACTTTCTTATTTTACATAATTACTTTTTTT
TTAACTTACAAAATCTTTTCCCCCCCTCTATTAGGTGGTCTCTTTTCTTT
TTAATCTCCCCTTCTTTTGGCTGGTCAAATTATCTCTCTATTTATTCTCA
ATTTATATACCTCCCCTTCTCTCCTCCTCATACATATTCTCCCTTACTAC
TCTATTGCTACACATACTACATTCTCCTCTTGTTCTAATATCCTATCTTC
TAATACTCTAACTAAATCCCGCTCTTCCTCTACATACTATACTCTTCTCA
TCATCTT

CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTACATACACGAAATGGAAAACC
TACCTGCACATGCCTGGGGGCACACAAACACACAATTAAAAAGTATATAT
CTAGATATCTAGATATATACACACACACACACATATCCATCCATATATAT
CCAAGACACAAAAGCCAGTCTTATTATATATTAGGTCTCTGGGTTGAAAA
CCTGCATCTCTGACTGGACCACAGCTGTGCTGGGCTTTTCTTCCCACCTC
CCCCAGGGCCCAGGCTCACCAAAAGGCACTTCTCTTTGAGAGTCCAGACT
TCTGGTTTATTTATAAGCGAGCAAGGCCAGAAGCTTCTCGTTCCCTGGGA
GGTAGCCACACTTAGGAACTAAAAAAAAAATGAAAGTGGGGCCTTTATGT
CACCCACATCCCTGCACCAGCCTCCCCCCTCCTCACCAGGTCTCCATTAC
CTTCCTTCTTCTCCGGCTTGTCGGTTTCCATCTAAGGCAAAATAAGGAAA
GCAGCTTTAGAACAGTCTTGGAGGCTGCCACACTGTGGGGGTGTTGCCAC
TGGCTTAAAGTTCAGGCTCTGCACACTGAATGCCTTACCTCGTCATCCTT
GGGTGGAGGATCTGGGATAGGGATGTCTAGAGGAGCCCGAAGGAAGGAAA
GGTCGGCCACATTGAGGCAATCCTCCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j05.b1 MSMg01no064_j05.b1 CHROMAT_FILE:
MSMg01no064_j05.b1 PHD_FILE: MSMg01no064_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:37 2005
         (412 letters)



>mm_chr14_56335046_56335857
          Length = 812

 Score =  716 bits (370), Expect = 0.0
 Identities = 397/406 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgatccctcttgaaatcggagggttagagcatctttgatccacatttccaca 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 610 gaattctttgatccctcttgaaatcggagggttagagcatctttgacccacatttccaca 551

                                                                       
Query: 65  tatccacttataaatactaagagcccccttgagagccctctccacctctatgcctgcaca 124
           ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 550 tatccacttataaatactaagagccactttgagagccctctccacctctatgcccgcaca 491

                                                                       
Query: 125 aggtcctgcttcccatagtcccctcttcagctaggcattctacagtctgtaagaaaccat 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aggtcctgcttcccacagtcccctcttcagctaggcattctacagtctgtaagaaaccat 431

                                                                       
Query: 185 cagacttgcttccaagcagcagtttccagctctggagtgtccagtagcagacagtgggtg 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 430 cagacttgcttccaagcagcagcttccagctctggagtgtccagtagcagacagtgggtg 371

                                                                       
Query: 245 gggtagaactattgagctttccttgactccaccgcccaaggcctccagcagtctgctgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gggtagaactattgagctttccttgactccaccgcccaaggcctccagcagtctgctgca 311

                                                                       
Query: 305 cttcagactcttgcctcctgccccaggctagtcttcctcaacctgcagggcaactctttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 310 cttcagactcttgcctcctgccccaggctagtcttcctcaacctgcagggcaactcgctg 251

                                                         
Query: 365 tgccaagaagagggcatccgggagtgtttggctgagatgctaccgt 410
           |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 250 tgccaagaagagggcatccgggagcgtttggctgagatgctaccgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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