BAC Information

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BAC

Clone NameMSMg01-064P20
Chromosome14 (Build37)
Map Location 57,240,028 - 57,240,341
singlet/doubletsinglet
Overlap geneParp4
Upstream geneRec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj
Downstream geneLOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P20.T7 (MSMg01no064_p20.b1)MSMg01-064P20.TJ (MSMg01no064_p20.g1)
ACCAG290306AG290307
length755761
length of high quality
(start - end)
318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no064_p20.b1 PHD_FILE: MSMg01no064_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005CHROMAT_FILE: MSMg01no064_p20.g1 PHD_FILE: MSMg01no064_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAATATAGCCCGGGCTCTCTTATTAGCACTCCTGTCTCAGTCTCT
GGAATGCTGGGATTACAGAAGTAAGCCATCATGCCTGGCTCAAAGGCACT
ATTAGCTATATGATTGGTTACCCTGAGATTATTCTTATAATCCCTATACC
ATTAGCCAATATTCAAATAGTATGGCATAGCCAAACTGTTTCAAGCCATT
TTATCTAACTTCTACTTAGAGGTTAAGCCATTATCCTGAGCCATAGATTT
GAGCCACCACTCCCAGCTCTGCCTTGCCATGTTCTTAAGCTGTCTCTGCC
CTCCTTTCTGGTTTTTGACCTTGACCTTCTAGTAACAGTGCTGGCTTAGT
GCTGCCAGAGCCCATTTCTGACATGTTTACTATGACAGGGCTGATTACAA
ATGGCGGTCCTGACTCTTTGGACTTTCCTATTAAATAAGCCAAGGTTGTT
GTATCTTGTTCAGTTGATTATTACATTGGTCACATTTGTGTCTCACTTAC
TGTATAGCAAAGCTTAAAATCCTTGGCACAGATTATCTCTGCCCTTGCAA
GACTATGATGTAGGGGCTATTAGCATGTAGGTGAGACCAAAAAAAAACAA
AAAAACCAAAAATCAAAAAACAAAACAGTTAACAGAGGTGCCAAATGTTC
AAGCTGACTTTGTCCCAAGAGACTACCGAGTTTATAAATGGTCCAGGCAG
ATCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTCTGCAAGTTGGGCGGCCTCCAC
AGGGATGGGGTAAGGATGTAACCACATGAACCCAGAAGGGGGAAAATCCT
CTGGAAAAAGGGCTTTGAGGGTTCTTATTCATTATGCAAAGGTGGAGGCC
AAAGGACAACTTGTCAAAATTGGGGCTCTCCCCCCCCCCCACCATGGGGG
TCCTAAAAAACTCGAGTTAACAGCAAGATTATAAGGCTGGTCAGCAAGCA
CCTTTGCCTGCTGAGCCATCTCGGTGATCCAAAAAAGGTTGTTTTTTAAA
ATCCATTCCTTTTATTTATANTTTACCCCCGCCCCCCGGGCTTGTAAGTG
TAAGGGAGGGGGAAGGCCCCCCCCAAAGAAAAAAAAAGAATCTGGAGGTC
CGGGGGATGGTAAGCTACTTGACATGATTGCTGGACCAAAACCTGGGCCC
CCCCCAAGAGCACCATGCACCCTTAACCACTGAGCCATCTGCCTAGCCCC
ACCTCTGAAAAATATTTTGAAAAGAGGGCTGGTTTGTGCCAGTTTGTAAA
GCTTGCCTCTGAACTCCCCCCTTCGCTTCCCCAAAACCCATATCCCCTCG
CCTTCGCCTCCCTTCCCGCTTTCTTTCCGTTCAATTCCCCCTTTTTTTCC
CCATTTTGTTCCCCTTCCCTTCCCCTGCACTTCACTTCGCCTTCCTCCCG
TTTTACATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p20.b1 MSMg01no064_p20.b1 CHROMAT_FILE:
MSMg01no064_p20.b1 PHD_FILE: MSMg01no064_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:22 2005
         (318 letters)



>mm_chr14_57239732_57240449
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacaatatagcccgggctctcttattagcactcctgtctcagtctctggaatgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggaattcacaatatagcccgggctctcttattagcactcctgtctcagtctctggaatgc 551

                                                                       
Query: 64  tgggattacagaagtaagccatcatgcctggctcaaaggcactattagctatatgattgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgggattacagaagtaagccatcatgcctggctcaaaggcactattagctatatgattgg 491

                                                                       
Query: 124 ttaccctgagattattcttataatccctataccattagccaatattcaaatagtatggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 490 ttaccctgagattattcttataatccctataccattagccaatattcaagtagtatggca 431

                                                                       
Query: 184 tagccaaactgtttcaagccattttatctaacttctacttagaggttaagccattatcct 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 430 tagccaaactgtttcaagccattttatctaacttctacttagaggttaagccattaacct 371

                                                                       
Query: 244 gagccatagatttgagccaccactcccagctctgccttgccatgttcttaagctgtctct 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 370 gagccatagatttgagccaccactcccagctctgccttgccacgttcttaagctgtctct 311

                         
Query: 304 gccctcctttctgg 317
           ||||||||||||||
Sbjct: 310 gccctcctttctgg 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)