BAC Information

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BAC

Clone NameMSMg01-064P23
Chromosome14 (Build37)
Map Location 26,243,204 - 26,243,604
singlet/doubletsinglet
Overlap genenone
Upstream genePolr3a, Rps24, LOC669315, LOC100039411
Downstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P23.T7 (MSMg01no064_p23.b1)MSMg01-064P23.TJ (MSMg01no064_p23.g1)
ACCAG290312AG290313
length1,186746
length of high quality
(start - end)
413 (34 - 446)57 (73 - 129)
definitionCHROMAT_FILE: MSMg01no064_p23.b1 PHD_FILE: MSMg01no064_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005CHROMAT_FILE: MSMg01no064_p23.g1 PHD_FILE: MSMg01no064_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATGCATTGGGCGCATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
CTACTCACCCCAGTGTGTACATCTTAGGGGACACAAGCCTATATCTTCTT
ATGCATCCAAGTCACAATTGCATCTGCCTGCTTTTGGCTGTTCACATCCC
AACGGAGTGCCACACAGCTGTGGAGATGTTCCACCCACCCACCTGAGCAC
CCCAGTCCTGTGCTTTAACAGTCAGGTCATACTCTGTGTACACATGCACA
TATCAACACCACACTGGTCCAGGCTGAGGGTGTGTGATTCCTGAGATGGG
CATGGTACAGAGAGAATGGCCTTAGGAGTTTTCTAAGGGCAGATAGCCCC
ACTGTCTCCTGGAGTTGGCTGGTTTGATCTGAGTTTTTAGCCGTGCTGTT
AAGTTTACAGTAACAATCTAAACTCACTGGCCATATCTATGGGACCCTGT
CTTCTCCCCCCCCCTTCACCTCCTCGTTCTTGAGAGAAATGCCAAGCTTG
GGCATCTGAGGCCCTTAGTCCATGGTTATCACAGTCATGCTCTGTGGACT
GAGAGTCAGTGTGGTGTTCTCTTTGCTGCTGTTGTTGCTGTTGACTGGTT
ATTCAGGGAATTACCTGGAAGTCCTGCCCCATGTAATGCTGGGTGTTAGA
AATTCCTCATTCCTGCCCCAAGTCACTTGAGCCCTACCAGAATCCAACGC
TGCACCCAGGTTGGGTTGTAGCAAGCTACTCAAGAGGGTCCCACTGTTCC
CTCAAGCCCTGCCCAGCTTGGCTATGGCTGTCTTCCTCCTAGGCTCTGGG
ACCTCGGGTACATGGCAGGGTTCTGGTAGTTTTGCTTCTCCTCTGTACAG
GTTTTCATGACCAGAAAAAAGGTTGTCAGTCCCAGGAAGGACAAACCCCC
CCCTCCAGAGGGCCCTGGAAAAACTTGCAAAAACTTCCTTCTTGGGTAAA
AGGTATTGTTAGCCCCCACGCCCTTTGTGAATAGTTAAGCCTTCCCCCAT
ATTTTTCGGTCGAAACATTGCTCTTTATTTTTTTTCTATTTCTCTTCTCT
CTACTATTTTCTCCTCTTTACCTTCTTCCTCTTCTCTTATATATTCTTTT
CATGCATTTATTTATACTCTCTCATCTTTTTATCTCTTCTCTCTTGTCTA
GTCTCCTCTTCTCTATCCAATCCATCATATTATTCT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAGGCAGCCCAGGGGGGACAGAGAAAC
AAGGCCATGAAAGGTAAAAGGGCAAGGCTAGGGCTGAAGCCGTCCAATGG
TGACAGGAGTGTTCATATGGTAATAGTCAAAACCCAGTGAACGGAGCTGT
GACCATGCATGGAAGGCAAGGCACAATCCTGACTCCAAGATTCTTCACTG
TCCCTACCAGGCACTTTCATGTGCCTTGTCCTGTGTGAAAGATGACAGGT
ACCATGCTACATACTGCATGCTACTTGACAGTCAGGGGACAATAGTCCTC
CACCGAATCCATTTTTTTTCCTTCACACCGAAAAAAACACACTCCTTCTT
TTTAGAGATGTTTCTCCGCCCCCCCCTCTGAAAATTTCCTCTGACCTCTG
CTGCAAAATCTATGGACAGCAAAGGTTGGTGGATCCTTTTAAGACCTTTC
TTGTGTGAGTTTGGATATGTAGGAACACAACTGGCCTCTGCACACTAGAC
ACCAGTGACACCGACAGCCAAAGATAGTCCTGAGACCTGGGAAGGGAGTA
ATAGAGTGCTTACTTAGCATGTGGGAGGTACTGGGTTCCATTCCCAGCCA
CAGGAAAACAAAGTATACCTTATCAAAACCGGACAACCCTCACCCTCCAT
TTTCCAAAATGCCCTCTAGAAACAAAGTGGTCCCTACTAAAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p23.b1 MSMg01no064_p23.b1 CHROMAT_FILE:
MSMg01no064_p23.b1 PHD_FILE: MSMg01no064_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:22 2005
         (413 letters)



>mm_chr14_26242994_26243804
          Length = 811

 Score =  719 bits (372), Expect = 0.0
 Identities = 395/404 (97%), Gaps = 4/404 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaattcc-tactcaccccagtgtgtacatcttaggggacacaagcctatatcttcttat 69
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggaattccacactcaccccagtgtgtacatcttaggggacacaagcctatatcttcttat 552

                                                                       
Query: 70  gcatccaagtcacaattgcatctgcctgcttttggctgttcacatcccaacggagtgcca 129
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 551 gcatccaagtcacaattgcatctggctgcttttggctgttcacatcccaacggagtgcca 492

                                                                       
Query: 130 cacagctgtggagatgttccacccacccacctgagcaccccagtcctgtgctttaacagt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cacagctgtggagatgttccacccacccacctgagcaccccagtcctgtgctttaacagt 432

                                                                       
Query: 190 caggtcatactctgtgtacacatgcacatatcaacaccacactggtccaggctgagggtg 249
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caggtcatactctgtgcacacatgcacatatcaacaccacactggtccaggctgagggtg 372

                                                                       
Query: 250 tgtgattcctgagatgggcatggtacagagagaatggccttaggagttttctaagggcag 309
           |||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||
Sbjct: 371 tgtgattcctgagatgggcatggtacagagagta---ccttaggagttttctaagggcag 315

                                                                       
Query: 310 atagccccactgtctcctggagttggctggtttgatctgagtttttagccgtgctgttaa 369
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ataaccccactgtctcctggagttggctggtttgatctgagtttttagccgtgctgttaa 255

                                                       
Query: 370 gtttacagtaacaatctaaactcactggccatatctatgggacc 413
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtttacagtaacaatctaaactcactggccatatctatgggacc 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 811
Length adjustment: 9
Effective length of query: 404
Effective length of database: 802
Effective search space:   324008
Effective search space used:   324008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)