BAC Information

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BAC

Clone NameMSMg01-065D24
Chromosome14 (Build37)
Map Location 34,361,376 - 34,361,623
singlet/doubletsinglet
Overlap geneFrmpd2
Upstream geneErcc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681
Downstream geneLOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065D24.T7 (MSMg01no065_d24.b1)MSMg01-065D24.TJ (MSMg01no065_d24.g1)
ACCAG290505AG290506
length700698
length of high quality
(start - end)
249 (63 - 311)393 (68 - 460)
definitionCHROMAT_FILE: MSMg01no065_d24.b1 PHD_FILE: MSMg01no065_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:42 2005CHROMAT_FILE: MSMg01no065_d24.g1 PHD_FILE: MSMg01no065_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAGAATACGCGGAATTCCAG
TATTTCTTCCTCAACTATTATCTTCATGATCTCCCCCCCCTTTCTCTCTT
GAAATAGAAAACATCTTGGAGATATAAATACTACCCCTGAGCAAGTTGAA
AAAATTTTTTTTCAAAAATAGTTTCACAGGAAAACAGGAGGAAAGAGAAG
GGTGATGAGGCTTGGCCTGGCTACACCGTGAGACAGTAATAGACAGGCTT
TCATGTCCTTGCTCTGTTGTGCGCCCCAGGAACAGGCACAGGTGATCAAA
GAGGCAGCTGGTGCTCAGGCTCACGCAGGCTCTTGCTGAGCCCAGGGGCA
CCTGGCAGCCCTGCTTCCTGACCTGGAGGCAGGAATCTCACAGAAGAGCT
CTTGTATCTCTGGGAGACAGGGAACATGGCTGCATTCCTTTCCCAGGTGA
CCGACTACTGCAGGTGGATGGAGTGAGTCTGTGTGGCCTTACTCACAAGC
AGGCTGTGCAGTGTCTCAAGGGTCCTGGGCAGGTGAGTACCCTACTACCA
GGGACCTTTTCTTACTTCCAGAGCTTTCTAAAACAACCTCAGATATTACT
GTTGCCTCTAGGTTGGAATGATGTAGCCAAGAAAAAGAGTGGCAGTTTTG
TAGTCTTACATCCCCCCCCCTTCACTCTTCATCTTAGTGCTGCTTTTCTG

ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCTGGACCAGAGAACATCAGCTAGCCTTTGAA
ACTCTCAAAAAGGCACTGCTGCAGGCTCCGGCATTGGCCCTGCCAGATTT
AAACAAACCTTTCACCCTATACATTGATGAAAGAAATGGAGTGGCAAGGG
GAGTCCTTACCCAGGTTTTGGGACCATGGAAGCGCCCGGTAGCCTACTTA
TCAAAGAAACTGGACGCTGTGGCCAGTGGATGGCCCTCCTGCCTGCGAGC
GATAGCAGCCACGGCTGTGCTAGTAAAAGATGCTGACAAACTGACTATGG
GCCAAAATGTTACTATAGTGGCCCCACACTCTCTTGAGAGCATCATCAGG
CAACCACCGGACCGCTGGATGACCAACGCCCGAATGATGCACTACCAGAG
CCTATTGCTGACAGAGCGAGTAAGTTTTGCACCCCCAGCCATTCTCAACC
CCGACTCCTTACTACCTGAGGTTGACGAGGCCCCTGCACATAATTGTGAA
GAAATACTGGCAGAAGAGACTGGAATCCGGCCAGACCTCACAGACCAACC
TTGGCCAGGGGCGATGACTTGGTTCACGGACGGAAACCTCTTTGTGTAAA
AGGTAAGCGGAATGTTGGGGCGGCTAGAATTGGATGGAAAGGTTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_d24.b1 MSMg01no065_d24.b1 CHROMAT_FILE:
MSMg01no065_d24.b1 PHD_FILE: MSMg01no065_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:42 2005
         (249 letters)



>mm_chr14_34361176_34361823
          Length = 648

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactattatcttcatgatctcccccccctttctctcttgaaatagaaaacatcttggaga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactattatcttcatgatcacccccccctttctctcttgaaatagaaaacatcttggaga 260

                                                                       
Query: 61  tataaatactacccctgagcaagttgaaaaaattttttttcaaaaatagtttcacaggaa 120
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 261 tataaatactacccctgagcaagttgaaaaaaaattttttcaaaaatagtttcacaggaa 320

                                                                       
Query: 121 aacaggaggaaagagaagggtgatgaggcttggcctggctacaccgtgagacagtaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaggaggaaagagaagggtgatgaggcttggcctggctacaccgtgagacagtaatag 380

                                                                       
Query: 181 acaggctttcatgtccttgctctgttgtgcgccccaggaacaggcacaggtgatcaaaga 240
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 381 acaggctttcatgtccttgctctgttgtgcgccc-aggaacaggcacaggtgatcagaga 439

                    
Query: 241 ggcagctgg 249
           |||||||||
Sbjct: 440 ggcagctgg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)