BAC Information

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BAC

Clone NameMSMg01-065I09
Chromosome14 (Build37)
Map Location 65,676,881 - 65,677,122
singlet/doubletsinglet
Overlap geneExtl3
Upstream gene4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I09.T7 (MSMg01no065_i09.b1)MSMg01-065I09.TJ (MSMg01no065_i09.g1)
ACCAG290713AG290714
length701683
length of high quality
(start - end)
49 (201 - 249)241 (70 - 310)
definitionCHROMAT_FILE: MSMg01no065_i09.b1 PHD_FILE: MSMg01no065_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005CHROMAT_FILE: MSMg01no065_i09.g1 PHD_FILE: MSMg01no065_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGTA
ATTCCAGGACGCCAGGGCTTCACCAAGAAGCTCTGTCTCAAAAAAAACCA
ACAAAAATAAATAAAATAAAACTGTTTGAAACTACAATCAGAATATTAGT
GATAAGTAAAAGTCAACTACGGTAGGAGTATTGAGTGCAAAGTTAATGAC
GACCAGAGGCCAGAAGTCTCTAGAGGAAGGGGGGGACTTGTCCAGCAGTA
GTGGGAAGTGCACACAATGGACTTTAGGATGCTAATAAAAGTTAAGTCCC
TGTGCCACTTGCACGTCTTTTCTTGGGTAAGGAGAGAGCTGCCTTTATAC
GAAAGTTTGGCATACTGTACCCGAGAAGGCATCCTAAGTGTATTATGTCT
TCTATAAAGGATCTCCACCCGAGTAATCTGTAGTTTTGGGCATTTTGGTG
CAAAGTTAGAGACGATTAAATATTTATGTGAATGTTACTCAGAATACTTC
ATATTATATGCGCTATATCTTTTAGCTTCTAATGGCACGTGCTATTTTGT
GATGGTTTTAGATGTCCCTCGAATAATTTATTATCCTTTTTTTCTCTAAA
AAATTCATTGCATTATTTACCCTGTCTATTTTGTTTTCCTTCTTTTCTTC
CCAATTGTTCCGTCCTGTCTGTGGGATCTCTTGTGTCTCACGCGGCCAGT
G
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGATAGCCAGAGCTATGTAAAGAGACCCT
GTCTGAAAACAACATATAAACAAATAAATGGAAAACTGAGTGTAGAATTA
ATACCTTACTTACCCCATTTATCCAGAACAACTGCACTTCAACAAGTAAG
GAACATAAAAACCTGAGGTATCTCATGCTTCCCTCACGCTGCTTTCATGC
TTTGCTGTTCTGTATACATCGCAGCACATTCATCTCTGACCAGGAACCAC
CAAGAGCTCAGATGTTTCAGAGGACAATGGTAATGTTACAGATCAGAAGA
AATGTTGCGTGGGGAGCCAGGAGCAAAAGATAGCATAGATAGAGGTGACT
GCAGCAACCCCCCTTTTTGGCCGAATGTACCTGCACTGTGAAACCTAAAT
GTGGACCCAGTGTGAAACCTAACGTGAAAAGATCTCTGGCTAAAGGTGTT
AGAGTTTCCTGTATAGAGACCCCACAGTAGTCCCATACAATGGTAACCAT
GTCTGAATGGCAGCGCTCTATAGTGTTCACTATCCATCAGGTCCTTCGTC
CTATGTACTCATCTTGTCCCGATTGAGTACCCTTGATCTTTTTTTTTCCT
TCCCCCTTCCTTTTGTTTTTTTCTTGTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i09.g1 MSMg01no065_i09.g1 CHROMAT_FILE:
MSMg01no065_i09.g1 PHD_FILE: MSMg01no065_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:03 2005
         (241 letters)



>mm_chr14_65676682_65677322
          Length = 641

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatagccagagctatgtaaagagaccctgtctgaaaac-aacatataaacaaataaa 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 caggatagccagagctatgtaaagagaccctgtctgaaaacaaacatataaacaaataaa 259

                                                                       
Query: 60  tggaaaactgagtgtagaattaataccttacttaccccatttatccagaacaactgcact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggaaaactgagtgtagaattaataccttacttaccccatttatccagaacaactgcact 319

                                                                       
Query: 120 tcaacaagtaaggaacataaaaacctgaggtatctcatgcttccctcacgctgctttcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaacaagtaaggaacataaaaacctgaggtatctcatgcttccctcacgctgctttcat 379

                                                                       
Query: 180 gctttgctgttctgtatacatcgcagcacattcatctctgaccaggaaccaccaagagct 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 gctttgctgttctgtatacatcgcagcacattcatctctgaccaggagccaccaagagct 439

             
Query: 240 ca 241
           ||
Sbjct: 440 ca 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)