BAC Information

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BAC

Clone NameMSMg01-065L03
Chromosome14 (Build37)
Map Location 116,162,695 - 116,163,055
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L03.T7 (MSMg01no065_l03.b1)MSMg01-065L03.TJ (MSMg01no065_l03.g1)
ACCAG290844AG290845
length650764
length of high quality
(start - end)
450 (44 - 493)334 (142 - 475)
definitionCHROMAT_FILE: MSMg01no065_l03.b1 PHD_FILE: MSMg01no065_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:16 2005CHROMAT_FILE: MSMg01no065_l03.g1 PHD_FILE: MSMg01no065_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAATACGAGAGATCCGCGGAATCACTTTCTTTACAATTTCAGGACATG
AGCAGAATAGAGCATATTCTTGGGCAGAGTGTAACATGACTGACTAGCTC
AGTTCCTAATAGAGTTTTTCTTTCTTTCTCCATTCTTTTGGGGTTTGCCT
CCATTGTCTTCATTTAAACAACACTCTAATCTTTTGAACTCTAAACAGAG
ATGCCCACTCATTCTCTCCAAACTTTACATTTTTTCATATCTTTCTACTG
AACTCCAAGATCTTGCACAGTAAATCTCACTAATGTTATTTAGCAGTGAC
CACACCACATGCTGAGAATTATGTTGAATTGAGCCAAGGTCTGCTGATGG
CCTTCTTTGGTTTCTTTATAATTTTAAAACCCTTTTCAATTGCTCTCAGT
AACTAGTTTTGAAGGACTATAAAGCAGGCAGATTTACCAAAACAATGTCC
CCTGCCCTGGTTCAATATTCTGTATCATTTTCCTTCTCCCTGTGACTGAA
TGGCTGACTGAACTAACCAAAGAAAGGGAATACTTATGTTGGCTCAAGGT
TCAGACTATATAGTCCAACATTGTAGGGCAGGAGTGAAAGTTAAAGAATT
AGCACTGTGCTTGTAATAGGAGGTTGCACTACAGAAGCTCATGACTTGGG

NNNNNNNNNNNNNNNNNNNNNNAATTTTTNNNNNNNNTTTNNNTTTTTTA
NTTATTTTTTTAAACACCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAGGCC
CTCAGATATACTCAAATTTTTGTGTGTTTGGTTATGTTTAGTTTTTTAAA
AAAATTTAATTTGTTTATTTCCACACAACTGCATTATCATTTTCAATGCC
ATTTAGGGAAGAATAGAACTATGACATAATATTTAAAGTTTGTATTTTAT
TTTCTGTAAAGTGTTGGGGGCTGGGGAGACAGCTTAGTGGTGACTGGTAT
GCTTCACTTTTGCAGAGCACACAAGTTCAATTGTAATCACCCACACAGTG
GCTCACATCCATCTAAAACTCCAGTTTCAGGAAATCTGTTGCCCTCTTTT
GACCTATGTATATCCTGCCCAGATACATATGCTAGCCAGACACTCATATA
TGTAAAATAAATAATAACAGATCTAAAAACGTTGCTGTATTTTTATTTTG
TTCTGATTTGTTCTGATTTTTTGTTTGTATCTTTGTTTCAATATGCTGAT
TTCCTGATTATTTATGGTGGATTTTATTTTAAGTACATGTAATCTTAGCC
TCAAAACTTCTCATAAGTATTAATGTATTCCATTACCAAATTAACCAAGC
TTTGTGAATTCTTCCTTTGTTTATAAGACCTTGGCAGCTATTTTTCAAAA
ACTGACACAAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l03.b1 MSMg01no065_l03.b1 CHROMAT_FILE:
MSMg01no065_l03.b1 PHD_FILE: MSMg01no065_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:16 2005
         (450 letters)



>mm_chr14_116162206_116163055
          Length = 850

 Score =  636 bits (329), Expect = 0.0
 Identities = 353/361 (97%)
 Strand = Plus / Minus

                                                                       
Query: 90  ttcttttggggtttgcctccattgtcttcatttaaacaacactctaatcttttgaactct 149
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttcttttggggttttcctccattgtcttcatttaaacaacactctaatcttttgaactct 791

                                                                       
Query: 150 aaacagagatgcccactcattctctccaaactttacattttttcatatctttctactgaa 209
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aaacagagatgcccactcattttctccaaactttacattttttcatatctttctactgaa 731

                                                                       
Query: 210 ctccaagatcttgcacagtaaatctcactaatgttatttagcagtgaccacaccacatgc 269
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 730 ctccaagatcttgcacagtaaatctcgctaatggtatttagcagtgaccacaccacatgc 671

                                                                       
Query: 270 tgagaattatgttgaattgagccaaggtctgctgatggccttctttggtttctttataat 329
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 670 tgagaattatgttgaattgagccaaggtctgctgatggccttctttggcttctttataat 611

                                                                       
Query: 330 tttaaaacccttttcaattgctctcagtaactagttttgaaggactataaagcaggcaga 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tttaaaacccttttcaattgctctcagtaactagttttgaaggactataaagcaggcaga 551

                                                                       
Query: 390 tttaccaaaacaatgtcccctgccctggttcaatattctgtatcattttccttctccctg 449
           ||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 550 tttaccaaaacaatggcccctgccctggtacaattttctgtatcattttccttctccctg 491

            
Query: 450 t 450
           |
Sbjct: 490 t 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)