BAC Information

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BAC

Clone NameMSMg01-065O02
Chromosome14 (Build37)
Map Location 49,738,163 - 49,882,040
singlet/doubletdoublet
Overlap geneLOC218997, Nat12, 1700011H14Rik
Upstream genePeli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik
Downstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O02.T7 (MSMg01no065_o02.b1)MSMg01-065O02.TJ (MSMg01no065_o02.g1)
ACCAG290985AG290986
length695694
length of high quality
(start - end)
397 (44 - 440)472 (71 - 542)
definitionCHROMAT_FILE: MSMg01no065_o02.b1 PHD_FILE: MSMg01no065_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:30 2005CHROMAT_FILE: MSMg01no065_o02.g1 PHD_FILE: MSMg01no065_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,881,666 - 49,882,040)(49,738,163 - 49,738,632)
sequence
TCAAAATTTGCGGCGCTAAACGACTCCTATAGTTCAGAAATCCGCGGAAT
TCATTGTTTTTACTCGCTGAGTAGAACTTCATTGTGTAAATGTTCATTCT
TTACTGGGAGTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG
AATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCT
CCCAAATGCTGGAATTAAAGGCATGCACCACCACTGCCTGGCTTCCATTC
TCTTGTTTTAGGCTTTATACAGAAAAATAAGAGCTGACAAAAGAATCTTC
ATTAATATTTTCTAAATATAATTCATATTTATCAAGGATGCAGCGATATT
TTTAAAGAAGAAAATGTATTTCGACTCAGTGATAGATTGTTTATTAGTGA
AAAACAAATAAAGAAATCAGCTATAGCGCCAAGATTTCTAGTCTGGGTTA
TTAGAGAAATGAGGTGTCATTTACAGAGATAAGGAAATGGGGGAAGGAAC
AGATGGAGTGCGATCACTAACAGATGGTTCTGTTGGATTTAGACATATTG
AAGCTGAAATGATGGGAAACAATCAAATGCAGATGTTACAGGGATAATTA
GAAATGCATTAATGCATCATGGACAGGGTGAATCCTGNTTGGGTAACCGT
GGGAACAAACTCTATTAGAGTCTATTAAGTTAAGTTAAAAGAGGG
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATAAAAAATAATTAAATTAAAAAGCAAAA
CAAAACAACGGACTTTGTGTTAGACAACAGCGCCCCCTACTGGGATTTCG
AGGCTGCCTGGACAAGCAGAAAAGGATTGGTGGTGTGGATCCAGGAAAGG
GAATCCATAAGAACTTTTAGATCGCTGCTAGACACCAACCAGGGAGCTCA
AGGATGCAGTGATGGAAACATTCCTTTCCTCTGTGTCATTATAAAAGCCA
GCTTCACCGCCTGGCAGTTTTAATATTCTTTACTATAAGCGTGCAATGCA
TTGATTCAGCTTTGATATTTTATTTTATTTACCTTTTGAGGCTGGACTGT
TGGCAAACTTGCTAGGTACCTGAGGATGGCTTTGACCTTCTGATCCTCCT
GCATCCATATCTAAGGTGCTAGGATTACAGGAGTGTACTACAGCGCCTGC
CTGGGTTGGCAGGGGGCGGGGGGTGGGGGGGGGAAGACTGCTAATTTTTT
TTTTGCCCACTCTTTCCCCTGCCAATTTCTTTTTCTCATGTTTATCGACG
TAGTACTCTTTGTCGCTCAACCATTCTTATTTTAGTCTTCCGCTAAGTTA
TATCTTTACCGTTGTTCCGGCTTCATTTTTTTTTCCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o02.b1 MSMg01no065_o02.b1 CHROMAT_FILE:
MSMg01no065_o02.b1 PHD_FILE: MSMg01no065_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:30 2005
         (397 letters)



>mm_chr14_49881252_49882048
          Length = 797

 Score =  717 bits (371), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 23  gctgagtagaacttcattgtgtaaatgttcattctttactgggagttcgagacagggttt 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gctgagtagaacttcattgtgtaaatgttcattctttactgggagttcgagacagggttt 730

                                                                       
Query: 83  ctctgtgtagccctggctgtcctggaattcactctgtagaccaggctggcctcgaactca 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctctgtgtagccctggctgtcctggaattcactctgtagaccaggctggcctcgaactca 670

                                                                       
Query: 143 gaaatccacctgcctcccaaatgctggaattaaaggcatgcaccaccactgcctggcttc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaaatccacctgcctcccaaatgctggaattaaaggcatgcaccaccactgcctggcttc 610

                                                                       
Query: 203 cattctcttgttttaggctttatacagaaaaataagagctgacaaaagaatcttcattaa 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cattctcttgttttaggctttatacagaaaaataagagctgacaaaagaatcttcattaa 550

                                                                       
Query: 263 tattttctaaatataattcatatttatcaaggatgcagcgatatttttaaagaagaaaat 322
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 549 tattttctaaatataattcatatttatcaaggatgcagtgatatttttaaagaagaaaat 490

                                                                       
Query: 323 gtatttcgactcagtgatagattgtttattagtgaaaaacaaataaagaaatcagctata 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtatttcgactcagtgatagattgtttattagtgaaaaacaaataaagaaatcagctata 430

                          
Query: 383 gcgccaagatttcta 397
           |||||||||||||||
Sbjct: 429 gcgccaagatttcta 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_o02.g1 MSMg01no065_o02.g1 CHROMAT_FILE:
MSMg01no065_o02.g1 PHD_FILE: MSMg01no065_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:30 2005
         (472 letters)



>mm_chr14_49737963_49738834
          Length = 872

 Score =  909 bits (470), Expect = 0.0
 Identities = 470/470 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaaaataattaaattaaaaagcaaaacaaaacaacggactttgtgttagacaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaaaataattaaattaaaaagcaaaacaaaacaacggactttgtgttagacaacag 260

                                                                       
Query: 61  cgccccctactgggatttcgaggctgcctggacaagcagaaaaggattggtggtgtggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccccctactgggatttcgaggctgcctggacaagcagaaaaggattggtggtgtggat 320

                                                                       
Query: 121 ccaggaaagggaatccataagaacttttagatcgctgctagacaccaaccagggagctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggaaagggaatccataagaacttttagatcgctgctagacaccaaccagggagctca 380

                                                                       
Query: 181 aggatgcagtgatggaaacattcctttcctctgtgtcattataaaagccagcttcaccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatgcagtgatggaaacattcctttcctctgtgtcattataaaagccagcttcaccgc 440

                                                                       
Query: 241 ctggcagttttaatattctttactataagcgtgcaatgcattgattcagctttgatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggcagttttaatattctttactataagcgtgcaatgcattgattcagctttgatattt 500

                                                                       
Query: 301 tattttatttaccttttgaggctggactgttggcaaacttgctaggtacctgaggatggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttatttaccttttgaggctggactgttggcaaacttgctaggtacctgaggatggc 560

                                                                       
Query: 361 tttgaccttctgatcctcctgcatccatatctaaggtgctaggattacaggagtgtacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgaccttctgatcctcctgcatccatatctaaggtgctaggattacaggagtgtacta 620

                                                             
Query: 421 cagcgcctgcctgggttggcagggggcggggggtgggggggggaagactg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcgcctgcctgggttggcagggggcggggggtgggggggggaagactg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)