Query= MSMg01no067_k20.b1 MSMg01no067_k20.b1 CHROMAT_FILE:
MSMg01no067_k20.b1 PHD_FILE: MSMg01no067_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:51 2005
(309 letters)
>mm_chr14_104724521_104725229
Length = 709
Score = 543 bits (281), Expect = e-159
Identities = 299/309 (96%), Gaps = 8/309 (2%)
Strand = Plus / Plus
Query: 5 gaattcatctagtcttgctggggtggagtcctctcaaatgtttcttatcatctgtgatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctagtcttgctggggtggagtcctctcaaatgtttcttatcatctgtgatca 264
Query: 65 taagcaagatactcaatactcggcccttctgcagcttactttctccttttggaaatggag 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 taagcaagatactcaatactcggcccttctgcagcttaccttctccttttggaaatggag 324
Query: 125 gttatatttataacttcttcattaagatatttgaggagagaagcaagacataaaagcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttatatttataacttcttcattaagatatttgaggagagaagcaagacataaaagcata 384
Query: 185 tgaccaggcacacaagaagcagcgtgcagacccctgcttgatgtgctacatcatttatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaccaggcacacaagaagcagcgtgcagacccctgcttgatgtgctacatcatttatct 444
Query: 245 tcatctcaatttataatcacagacaaaaagctattt----taagatattttgtaagaaat 300
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 445 tcgtctcaatttataatcacagacaaaaag----ttacaataagatattttgtaagaaat 500
Query: 301 catcctgta 309
|||||||||
Sbjct: 501 catcctgta 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_k20.g1 MSMg01no067_k20.g1 CHROMAT_FILE:
MSMg01no067_k20.g1 PHD_FILE: MSMg01no067_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:51 2005
(269 letters)
>mm_chr14_104872974_104873642
Length = 669
Score = 497 bits (257), Expect = e-145
Identities = 266/269 (98%)
Strand = Plus / Minus
Query: 1 taggctgctaaggacagttactagtagtgttcagcgccgctctcaagtggagctttgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 469 taggctgctaaggacagttactagtagtgttcagcgccgctctcaagtggagcttcgctc 410
Query: 61 cgcctcttttcacaatccccagagactcagagtcttgctccagccgcctaaaccggcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cgcctcttttcacaatccccagagactcagagtcttgctccagccgcctaaaccggcggc 350
Query: 121 ctggtggcgagacatcgactccctaggcactggaaggcttcggggatggcggggcgggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctggtggcgagacatcgactccctaggcactggaaggcttcggggatggcggggcgggct 290
Query: 181 atctgctgtccattaagccaaggcttggccctctgagggcttggagagcttcctagtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atctgctgtccattaagccaaggcttggccctctgagggcttggagagcttcctagtgtt 230
Query: 241 tatgttgaggatgtgaggtcctgcccacc 269
|| | ||||||||||||||||||||||||
Sbjct: 229 tagggtgaggatgtgaggtcctgcccacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
