BAC Information

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BAC

Clone NameMSMg01-068M12
Chromosome14 (Build37)
Map Location 118,051,166 - 118,225,331
singlet/doubletdoublet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068M12.T7 (MSMg01no068_m12.b1)MSMg01-068M12.TJ (MSMg01no068_m12.g1)
ACCAG293195AG293196
length697685
length of high quality
(start - end)
244 (66 - 309)148 (108 - 255)
definitionCHROMAT_FILE: MSMg01no068_m12.b1 PHD_FILE: MSMg01no068_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005CHROMAT_FILE: MSMg01no068_m12.g1 PHD_FILE: MSMg01no068_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,225,088 - 118,225,331)(118,051,166 - 118,051,313)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCCACTG
ATTTTCAAAACCCCCAGCAACTAAAATCCCTGCATCTGAAATGTGTCTGG
ACTCTCCATAGGCAGTGCATCTTGGCCGATGCAGTTACCACGGATCATGG
CTTCTTTCAAAGCTAAATAAAGTATGTGACATGCACAGACAGAATTTATG
AAGCTTCTTGGAAACTTCCTACAGATTCAACAGGCCATGGTGTATAATGC
CAGTCCACCTTCCAGTCGGCATTGCTGGGCTCTTTCTCTTTGTTTCAAAT
GCAATTGTGTTTCATGAATCCCGGCATTATAAAATGACCGCTTGTAATTA
ACTCCTTCCACATGTCTGGTCTTGACCAAATCTCTAGTTTGGCCATGTGA
CCCATCACACATTACTGTCTGAACTCCGCAGCCAGTTTCTGGTTTTGTGC
CATTCCAAGCTGGAGAAGATGAGATGTTCCAATTCTTCTTTAATATCATG
AGACAGAGACCATGATTCAAGAATTTCACTAGGTATGTCTAGACATTTAT
AGAACTGTTTCTACTCATCTCATTTACACCGAGTGCTTTGTGATAAAACC
CCCACCATTTCCTCTTACTGGAATATAATAGGTTCTCTATAGAGTGATTT
ATCCCGTGTGTTTCCGGTTTTTGCCTGTCCTATGCAATGACCATCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAACATTGGTGTTCAGTTGTCCACTGCATTTAGTACAGCTTTGG
GGACCCAATACTTCAAGTAAGCTAACCAGGATGACTTGCTGACTTGTTAG
GTCACTCGCCTTCCAACTAGAGGGGTCAAGCTAGTACCCACCAATGTTTA
ATCACCCTCTCTGTGCCTGCCAGAGAAGGTTCCTTCAAGCCTTGAGTCAT
TCAACATATCAGGGTTAATGTTCTTGAACTTACTGGAGCTAGCTGAACAG
TTATTCAATTGTTCCCTGGGACTACATGTTATGGGAATTATGATATATGT
CCTAGATGGTTGCAGGTACAGCCAGACCCCTGTCAGAATCTGGCATACCA
TTTTCATATGCAAAAGCTTTTCACCTATAAGAATATATGTGCCACATACC
CTATTGCTGTATGCCCTGACTAGTTCCCGACGACCTTTGGCCTGTATGGC
TGACTATAGATCCACAGAACTAGTCAGCCTCACCTGGAATCATGATGTCC
TCTGTTAGGGACCGGCACTACCGTTATTATGTTATGCCAGCGGGCACAAA
GTGTTGTTTACTAATAACATGCGCCTTTTTAGGGCCCCGCGTGGCACTTA
GTGTTGGCTTATCTAACATGTTTGTTATTCTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_m12.b1 MSMg01no068_m12.b1 CHROMAT_FILE:
MSMg01no068_m12.b1 PHD_FILE: MSMg01no068_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
         (244 letters)



>mm_chr14_118224888_118225531
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaactaaaatccctgcatctgaaatgtgtctggactctccataggcagtgcatcttgg 60
           ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 444 agcaactaaaatccctgcacctgaaatgtgtatggactctccaaaggcagtgcatcttgg 385

                                                                       
Query: 61  ccgatgcagttaccacggatcatggcttctttcaaagctaaataaagtatgtgacatgca 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 ccgatgcagttaccatggatcatggcttctttcaaagctaaataaagtatgtgacatgga 325

                                                                       
Query: 121 cagacagaatttatgaagcttcttggaaacttcctacagattcaacaggccatggtgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 cagacagaatttatgaagcttcttggaaacttcctacagattcaacaggccatggggtat 265

                                                                       
Query: 181 aatgccagtccaccttccagtcggcattgctgggctctttctctttgtttcaaatgcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgccagtccaccttccagtcggcattgctgggctctttctctttgtttcaaatgcaat 205

               
Query: 241 tgtg 244
           ||||
Sbjct: 204 tgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no068_m12.g1 MSMg01no068_m12.g1 CHROMAT_FILE:
MSMg01no068_m12.g1 PHD_FILE: MSMg01no068_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
         (148 letters)



>mm_chr14_118050966_118051513
          Length = 548

 Score =  263 bits (136), Expect = 3e-75
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacttcaagtaagctaaccaggatgacttgctgacttgttaggtcactcgccttccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacttcaagtaagctaaccaggatgacttgctgacttgttaggtcactcgccttccaac 260

                                                                       
Query: 61  tagaggggtcaagctagtacccaccaatgtttaatcaccctctctgtgcctgccagagaa 120
           |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tagaggggccgagctagtacccaccaatgtttaatcaccctctctgtgtctgccagagaa 320

                                       
Query: 121 ggttccttcaagccttgagtcattcaac 148
           ||||||||||||||||||||||||||||
Sbjct: 321 ggttccttcaagccttgagtcattcaac 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)