BAC Information

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BAC

Clone NameMSMg01-069I13
Chromosome14 (Build37)
Map Location 96,418,343 - 96,418,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069I13.T7 (MSMg01no069_i13.b1)MSMg01-069I13.TJ (MSMg01no069_i13.g1)
ACCAG293769AG293770
length684701
length of high quality
(start - end)
189 (105 - 293)34 (147 - 180)
definitionCHROMAT_FILE: MSMg01no069_i13.b1 PHD_FILE: MSMg01no069_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:19 2005CHROMAT_FILE: MSMg01no069_i13.g1 PHD_FILE: MSMg01no069_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCATAACACTCCTAATGCTAGAAATCCGCGGAATCCTTGTATATCAAGAA
CAGGTTAATCCATATTTAAAAATATACACCACAATATACTTCTTTTTTCA
CTATGCATGCTCTGTATGTGCTGAGATGGATTATTCAATTTTTATTTTCT
GAAATAAATAAAATCTAGTCCATCATACGTATTGTAAAATTTCCAACATT
TTTGTTACTGGAATACCTCATCATAATGTCCCATGACATTTCACAGAACT
CTTTGCAAAGATCTTACTTTTGAATTTTGTTGTAACCTTCTCTTTTTTTG
GCATCCTTTCTGAGCTGTCTGACCTTCTGAGAATTTTTTACTTCTACCCC
CACGCTGAATTCCAGTGCTCAGAATGTGGATTTGTAGAATAACTGGTGAG
TCTGAAATACACACTTCCTCGTTGTGTTTTGCATGTGACCTCCATGACTA
TTTTTCTATTTGCTCTCTCATTATCCTTATTGGCTACCCCCTTCTGATTA
TAGAACAAATTATTCTTAATGATTACACCGTTCTCTCCGACCAACACAAA
ACATTTTTCAAATCTCCCCTGTTATCTGATGAAGTACATCGTTCACTTCA
TAAATCCATTACCCTCCCCTCATGTCTGCCCTTGACCCTTTTCGCTTTAT
CAAAACATTCCCCTTATTCCGCCTCTTCTTCTTT
TGATAGGGGAGGCTGGCGGCGCCTGTTCCCAAATTTAGGTGACCTATAGA
ATTACCGAAAAAATTCACCTGAGGAAACCGAATGGCAGAGAAGCACTTGA
AAATTGTCCCCCATCCTTAATCATCAGGGAAATGCATATCAATAAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGCGGTAGTGCATGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTT
CCTCTTTTTATTGGACATAATACTACCGGAGGATCTAGCAATTTTTTTTT
TTGCGCCCCCCTCCCCACCATGCCCCAATTGTCAAGAAATGTTACACGTT
CCTCTACGATCCAAACAAAATTATTTATCCTAGGGCGGGAAGCTCGTTAC
TTTTTTCTTTGCTTTTCCATTTAACTATGCCTATACAATATGCCTTACCT
TCTTCTCTATGTATCCCTTTTCATCTCTTTTTTTTAATTAATTTTTCCAA
TTTTTCCATCTCCACGCCCTCTTCTTCTATTCTCCCCCCCTGACTATCTT
TCCCCTTCCCCCTCCAGACTTTCCTTCTCTCCTCATCCCTTCCCCTTCTT
TCTTTTTCCCTTTTCCTTTCTTTACCTCCTTTCCCATCCTTCCCCCCCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_i13.b1 MSMg01no069_i13.b1 CHROMAT_FILE:
MSMg01no069_i13.b1 PHD_FILE: MSMg01no069_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:19 2005
         (189 letters)



>mm_chr14_96418143_96418734
          Length = 592

 Score =  321 bits (166), Expect = 2e-92
 Identities = 185/192 (96%), Gaps = 3/192 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatgctctgtatgtgctgagatggattattcaatttttattttctgaaataaataaaat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatgctatgtatgtgctgagatggattattcaatttttattttctgaaataaataaaat 260

                                                                       
Query: 61  ctagtccatcatacgtattgtaaaatttccaa-catttttgttactggaatacctcatca 119
           |||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 261 ctagtccatcatacttagtgtaaaatttccaaacatttttgttcctggaatacctcatca 320

                                                                       
Query: 120 taatgtcccatgacatttcacagaactcttt--gcaaagatcttacttttgaattttgtt 177
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 321 taatgtcccatgacatttcacagaactctttttgcaaagatcttacttttgaattttgtt 380

                       
Query: 178 gtaaccttctct 189
           ||||||||||||
Sbjct: 381 gtaaccttctct 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 592
Length adjustment: 8
Effective length of query: 181
Effective length of database: 584
Effective search space:   105704
Effective search space used:   105704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)