BAC Information

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BAC

Clone NameMSMg01-069J19
Chromosome14 (Build37)
Map Location 84,729,249 - 84,729,454
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J19.T7 (MSMg01no069_j19.b1)MSMg01-069J19.TJ (MSMg01no069_j19.g1)
ACCAG293829AG293830
length710711
length of high quality
(start - end)
382 (40 - 421)205 (69 - 273)
definitionCHROMAT_FILE: MSMg01no069_j19.b1 PHD_FILE: MSMg01no069_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:25 2005CHROMAT_FILE: MSMg01no069_j19.g1 PHD_FILE: MSMg01no069_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTATTTACCCCTGTGCCTCATTTTTAATAGGATTATTTTGGTTTTTGGAG
TCTAAAGCCTTTACATATTTTAGACATTATCACTCAATTGGATGTAGGGA
TAGTAAAGATCTTTCCCCGATCTGTTGCTGTTCTGTACTATTGACAGTGT
CCTTTGCCATACAGAAGCTATTCAGTTTCATGAGGTCCCATTTGTCAATT
GTTGATCTAAGATTCTGAGCACATGGTTTTCTGTTCAGGGAATTTTTTCC
TGTGCTAATGTTTTCAAGGGTATTTCCTTTCTCTTCTATTAGATTCAATA
TATCTTGTTTTATGCTGAGGTCCTTGGGTCAATAGAGGATGACCTTAGTT
GAAATGGCAAGATGGAGCCTGGAGGATTCACCTCCAGTAGATAGTCAGGG
CCACCAAACTACATTCAAAAATTTTGACCCAGAATTGTACATGTCTAAAA
GAAATTCTAGGACAAAAATGGAGCATAGATTGACAGAAAGGGCATCCAGT
GACCAGCCCTACTTGGGACTTATCCGGTGTTTGCGAACCAAATCCTAATC
CTATTACCGATGTCATGCCGTACTTGCAGACAGGAACCTCGCATGACTGT
CCTCTGACAGGCTCTACCACCACTTGTCTGAAACAGATGCTGTTACTTAT
AGCCTTATTT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCATTTTTTGTTTTGTGATTATTCTAGCAA
ATATACATTTCCTATCATCTTTCCTTGCCACTAAATAGAAGAGACAAATA
GTAGACCAGAAGTATTTGCCCAAAGTTCTGAAGACCTGAATGTATAATTT
TAAGAAAATGTATCCAGAAAACATAATATGACAGAATAATTATATACTCT
CTGATACTGGCTTCAAAAGCGTGTTAAATAAGAAAGCTTAGAAAATGGGC
CTTTTAAGTTTAATAGGTGTTTTTTTTAATGTTATATTTTGAAGGGCTTA
CATAGAAATATCACATTTGTGAGAAAATGTAATCCAGTTTTTGTTACAAA
GGTTTCAGAGTCTGCACCCAGTGTTGTAACAAAACAGTTTTATATCTTGG
AACTCAATAGAACTATTTTTACATTCCTGATTACTCTAAAACTCATATTA
GTGCTGACATATCCATTTCTAACTATCTTGTTTTATCAGTTACAAAGAAA
ACCAATTCTATCTTTGTTTCAGGGGCTATACAAACTATCCATGCTGCACA
AAATAATTTCCAACTTTTTTACTAAATCAGTCACTGATGTGAGAAAATTT
GCAGAGGAAAGTTTTATTTTGATACTCTTTCATTACATCCAATCAATATA
GCCTGCTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j19.g1 MSMg01no069_j19.g1 CHROMAT_FILE:
MSMg01no069_j19.g1 PHD_FILE: MSMg01no069_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:25 2005
         (205 letters)



>mm_chr14_84729049_84729654
          Length = 606

 Score =  375 bits (194), Expect = e-109
 Identities = 203/206 (98%), Gaps = 1/206 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcattttttg-ttttgtgattattctagcaaatatacatttcctatcatctttccttg 59
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cttcatttttagtttttgtgattattctagcaaatatacatttcctatcatctttccttg 347

                                                                       
Query: 60  ccactaaatagaagagacaaatagtagaccagaagtatttgcccaaagttctgaagacct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccactaaatagaagagacaaatagtagaccagaagtatttgcccaaagttctgaagacct 287

                                                                       
Query: 120 gaatgtataattttaagaaaatgtatccagaaaacataatatgacagaataattatatac 179
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 286 gaatgtataattttaagaaaatgtatccagaaaacaaaatatgacagaataattatatac 227

                                     
Query: 180 tctctgatactggcttcaaaagcgtg 205
           ||||||||||||||||||||||||||
Sbjct: 226 tctctgatactggcttcaaaagcgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 606
Length adjustment: 8
Effective length of query: 197
Effective length of database: 598
Effective search space:   117806
Effective search space used:   117806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)