BAC Information

Click to search

BAC

Clone NameMSMg01-071A02
Chromosome14 (Build37)
Map Location 119,263,271 - 119,263,690
singlet/doubletsinglet
Overlap geneCldn10
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
Downstream geneDzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324, LOC100043830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071A02.T7 (MSMg01no071_a02.b1)MSMg01-071A02.TJ (MSMg01no071_a02.g1)
ACCAG294892AG294893
length707828
length of high quality
(start - end)
430 (42 - 471)---
definitionCHROMAT_FILE: MSMg01no071_a02.b1 PHD_FILE: MSMg01no071_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:16 2005CHROMAT_FILE: MSMg01no071_a02.g1 PHD_FILE: MSMg01no071_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACAGCATCAACAAGACAACAAGAAGAAAGCGGAAAACATGTTTCAAGG
CCTGAACGATCTTCATTTTAGGATTCGGGCACAAGAGTGCGATTCAAACC
AAAGCTTGTGGCAAACAGCAGCCTTTCAGTGCTTTGCTAAGGACCCAGAT
ATGTGGGCTCATGCCACTGACAGTCACACCTTCTGAGGCCACCACCAGGG
AGAAGACACTTAGAAGTAACTTGGTATAGCCTAATGTGTGCCATTTGTGG
GAAAAGGAACAGATCCATCGGCAAAGTCTTGCCTCCTCAGACTGTCAACA
TAGCAGGAAGCTTTGCACAGGTCTCTTCCAGACCAGATTCTCTACAGTTA
CAGAGTCACTTGGGGGCACTCTGGTAGGTAGACAGAACTGAAGGAGATGC
TTTCTGACCTCAAGAAAGTTACAGAGTCCTCATGCCGGTCTAGCAAGACA
TCAAAGAAACATCTAGAACCCTCTTCCAGCACCTTCTCCAAACCCTCTGC
TCACCTGGCTTGGCAGAGTCATGAATTGAGTCTCACACATGTTTCAAGCT
CAAATGAATTTGAAAATCAGACAGCAGTTATTAAATTCTAGCAAAGCCCG
TCCGAAAACACGTCCTCCTACAATAAACCTTGGCCAAAAATTGCCTTTAA
CGAAGAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCC
CCCCNNNNNNNANNNNNNNNNNNNNCCNNNNNCCCCCCCCCCCCCCCNNC
CCNNNACCCCCCNTNCCCCNNNNNCNNNNCNNNNNNCNCNNNNNNCCNNN
CCNCCNCNNCNCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACTNTCCTCCCCCCACCCCCACCCCCTATAATTATTAAAATTTTN
CNCCCTCATNNTNTNNNNNCTCTCTTATGACTAATTGGGGGTTAAGGGCC
CCTTGGGNCGGGGCCCGACTCATGAGNCCCGGTTTCCCACCATATATAAG
GTTGGACACCTAATAAGAAAGGGAACCCGGCGCGAAATTTCACTCTTAGN
CCAAAAAAAACAGTCAAAAACGTTCACCAGGTTAAGCCAATCAATGGATG
GCTCCACCATAGGCTTAGGAAAAAAAACTAATGGCCAGCCTGGGGGGGTT
TCTGGTAAGCCCCCCCCCCCCCCCCCCAACTGGCGCCCCGGGTGGGGGCA
AAAAGAATGAAAACAAAAAGGGGGGGGGGCCCCTTTAAAACCAAGGGGGG
GGGGCCCCCGGGGCCTAAAGGAAAGAGAAACCGGGTGCCCTTTTGGGGGA
CCCCCTTAAAAAGGGAAAACCCGGGGTCCAGGGTGTGGGGAACCACCGGG
GGGGAAGAGCCCCCCAAAAAAGCGGGGGCCCCCCCATTTTTTTGAAAGGA
GGGTTAAAAATAATAAAAAAAAACATTTTTTCTCCTTAAAAAAAAAAAAC
ACACCCCCCCCTGGGGTGGGGGGGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_a02.b1 MSMg01no071_a02.b1 CHROMAT_FILE:
MSMg01no071_a02.b1 PHD_FILE: MSMg01no071_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:16 2005
         (430 letters)



>mm_chr14_119263067_119263890
          Length = 824

 Score =  739 bits (382), Expect = 0.0
 Identities = 413/430 (96%), Gaps = 14/430 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacagcatcaacaagacaacaagaagaaagcggaaaacatgtttcaaggcctga 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattcaacagcatcaacaaaacaacaagaagaaagcggaaaacatgtttcaaggcctga 565

                                                                       
Query: 65  acgatcttcattttaggattcgggcacaagagtgcgattcaaaccaaagcttgtggcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acgatcttcattttaggattcgggcacaagagtgcgattcaaaccaaagcttgtggcaaa 505

                                                                       
Query: 125 cagcagcctttcagtgctttgctaaggacccagatatgtgggctcatgccactgacagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagcagcctttcagtgctttgctaaggacccagatatgtgggctcatgccactgacagtc 445

                                                                       
Query: 185 acaccttctgaggccaccaccagggagaagacacttagaagtaacttggtatagcctaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaccttctgaggccaccaccagggagaagacacttagaagtaacttggtatagcctaat 385

                                                                       
Query: 245 gtgtgccatttgtgggaaaaggaacagatccatcggcaaagtcttgcctcctcagactgt 304
           ||||||||||||||||||||||||||||||| || ||||||     ||||||||||||||
Sbjct: 384 gtgtgccatttgtgggaaaaggaacagatccttccgcaaag-----cctcctcagactgt 330

                                                                       
Query: 305 caacatagcaggaagctttgcacaggtctcttcc---ag-accagattctctacagttac 360
           |||||||||||||||||||||||||||||        || ||||||||||||||||||||
Sbjct: 329 caacatagcaggaagctttgcacaggtct-----ggaaggaccagattctctacagttac 275

                                                                       
Query: 361 agagtcacttgggggcactctggtaggtagacagaactgaaggagatgctttctgacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agagtcacttgggggcactctggtaggtagacagaactgaaggagatgctttctgacctc 215

                     
Query: 421 aagaaagtta 430
           ||||||||||
Sbjct: 214 aagaaagtta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 824
Length adjustment: 9
Effective length of query: 421
Effective length of database: 815
Effective search space:   343115
Effective search space used:   343115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)