BAC Information

Click to search

BAC

Clone NameMSMg01-072H15
Chromosome14 (Build37)
Map Location 46,662,706 - 46,663,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072H15.T7 (MSMg01no072_h15.b1)MSMg01-072H15.TJ (MSMg01no072_h15.g1)
ACCAG296011AG296012
length664675
length of high quality
(start - end)
316 (44 - 359)336 (80 - 415)
definitionCHROMAT_FILE: MSMg01no072_h15.b1 PHD_FILE: MSMg01no072_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:14 2005CHROMAT_FILE: MSMg01no072_h15.g1 PHD_FILE: MSMg01no072_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATTTTGTCA
AATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCCTAAAATGAGCTGGGT
AGAGTACTTTCTACTTCNATCTTGTGAAAAAGTTTGTGCAGAACTGTAAT
TATATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAATCCGTCTGGTC
CTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTA
TGGGATATGGCACTGTTTAGAAGGTCATCTTGATCTTGATTCACCTTTGG
TACCTGTTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTT
TTGTTGAGTATAGN
TTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCGAAATTCTTGAATGAAA
TATGACAGCTGTGTCCCAAGCTAGTAGGCCAAAACTATCAGTTTGTGTTC
TTACCACACTTTCATGTGCATCAAGAAGTTTGAATGTAACTCAGTTGGCA
AGTACTAGCCAGGAGGCCTTAGGGTTGATCCTTGGAATGACAGAAACTAT
GCACAGTGGCACACACCTCCATCCCAGCATTCATGAGGTAGAGGCAGAAA
GATCAGGAGTTCAAGGTCATCCTAGACTACAAAGTAAATTTGAGGGCAGC
ATGGTCTGCGTGAGATATTGCCTTAATGAAGAAAGCACGGATGGGTGTTG
GGAAGATGACAAGAAGCAGGATAACGCCAAGAGGAAGAGGCACCGAGGTC
CTAAGACTCTTTGGTCTGATTTATACTACGAAGGAAAATCATTCTAATTC
GAAATCATTTTAATTTGAAATGCATAACAAAGTAAATACCATTTTCACAT
TGAAAATCTTGACCTGATAGAAAATGAGATTTCTAACCTGTTAAATCAAC
TCTTATTTGGTATAACCATCCCTGCTCTGTATCACTGACCCATATCCAGA
ATGCATTTGTGCCTACTATAGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_h15.g1 MSMg01no072_h15.g1 CHROMAT_FILE:
MSMg01no072_h15.g1 PHD_FILE: MSMg01no072_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:14 2005
         (336 letters)



>mm_chr14_46662706_46663441
          Length = 736

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcgaaattcttgaatgaaatatgacagctgtgtcccaagctagtaggccaaaactatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctcgaaattcttgaatgaaatatgacagctgtgtcccaagctagtaggccaaaactatc 243

                                                                       
Query: 61  agtttgtgttcttaccacactttcatgtgcatcaagaagtttgaatgtaactcagttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtttgtgttcttaccacactttcatgtgcatcaagaagtttgaatgtaactcagttggc 183

                                                                       
Query: 121 aagtactagccaggaggccttagggttgatccttggaatgacagaaactatgcacagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aagtactagccaggaggccttagggttgatccttggaatgacagaaactatgcacagtgg 123

                                                                       
Query: 181 cacacacctccatcccagcattcatgaggtagaggcagaaagatcaggagttcaaggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cacacacctccatcccagcattcatgaggtagaggcagaaagatcaggagttcaaggtca 63

                                                                       
Query: 241 tcctagactacaaagtaaatttgagggcagcatggtctgcgtgagatattgccttaatga 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62  tcctagactacaaagtaaatttgagggcagcatgggctgcgtgagatattgccttaatga 3

             
Query: 301 ag 302
           ||
Sbjct: 2   ag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)