BAC Information

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BAC

Clone NameMSMg01-073A22
Chromosome14 (Build37)
Map Location 34,925,248 - 34,925,597
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8
Downstream geneLOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073A22.T7 (MSMg01no073_a22.b1)MSMg01-073A22.TJ (MSMg01no073_a22.g1)
ACCAG296449AG296450
length720743
length of high quality
(start - end)
565 (43 - 607)349 (71 - 419)
definitionCHROMAT_FILE: MSMg01no073_a22.b1 PHD_FILE: MSMg01no073_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:00 2005CHROMAT_FILE: MSMg01no073_a22.g1 PHD_FILE: MSMg01no073_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAA
TTCAACTCCCCAATACAAAGACATAGGCAAACAGAATGGAAGAGAAAGTA
GTATCCATTATTCAACTGCATACAAGAAATAAATCACCACAACAAAAATA
GACATTACCTCAGAGTAAATGACTGGAAAAAGATTTTCTGAACAAATGGA
CTCAAGAAGCAAGCTTCTAATAATTAACCAAATAAATCTTTCAACCAAAA
TTAATCAAAAGAGATGGGGAAGGAAATTTGATACTCATCAAAGGGAAAAT
CAACTAAGATAATTTCACAATTCTGAACATCTATTCCCCAAATGTAAGGG
CACTCACATTTTTAGAAGAAATCTTACTAAAGTTTAAATCAAACATTGAA
CCCCATACACTAATAGTGGAAGACTTCAACACCCCACTCTCACAAATAGA
CAGATCATTGAGACAGAAACTAAACAGAGAAATAATGAAACTAGCCAGCA
TTGTGAATCAAATGAACCTAACAGACATCTACAGAAACTTACAGGTTGGA
TAGGGGAAGAGAGTAGGCAGGAGAGAGATAGGGGATTTTTGGATGGGGAT
AATGAGAGGACNAGATGGTCCCTTTTCCCTTCCCCTATGACTATCTTCTC
CTTTCAGTATTTTATGGAATTTTCTCCTAAATGACCCTCTTCCCCCCCCT
TCTTATACCTTTTTTCTCCT
ATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATCCATTTTTTCATGATATACTGTGAGT
GTCTCTGTGCATGATGGCATACCTATGGAGGTCAGAGGGAAAGTCATGGG
AGACAGTTGTCTCCTTCTATCCTGTGGGCACCAGGGATTGCACTCAGGGT
CTGGCTTGGTGGCAAATGGCTGATGTGATGAACCGTTTTGCTGGCTCCCA
ATCTATTACTTTAAAAAGAAGGAAACAGAGAGCTTTTGGTGAGTGAAGGT
AGAGAGGGATTCAACTTTTATCTTCCTGCTTCTATTAGCTGATAGTGCAC
ACATCACGTGAGTATAGTCACATGTGCTCACTTTCACACATGAGAGGTGG
GGGGAAGAGGGATAGGGAGAGGTATATGCTTTTTTTCCTCTCCTCTCTCT
TTCTTCCCCCCTTCTCTTCTCTCTTTTTCTTCTTCCCTTTTTCTTCTTCT
TTTTTCTCATCCTCCTTCCTTCCTTACTTATTTATCTCTTCTTCTTTTTC
TTTCTCCCTTTTTCTTTTCTTCCTATTTCTTCTTTCCCCATCTACTTCCT
CCCCCTCCTCCCCCTTTTTCCTCCTTTCCTCTTTTTTTTTTTCCCTTTAC
CCCTCCTTTCCTCTCTTCTTCCCCCCCTTTTCCCCTTCATTCTCCCCTCT
CTTTCCCTCTCCCCTCTCCTTTTTTCCACCCTTTTCCTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_a22.g1 MSMg01no073_a22.g1 CHROMAT_FILE:
MSMg01no073_a22.g1 PHD_FILE: MSMg01no073_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:00 2005
         (349 letters)



>mm_chr14_34924870_34925618
          Length = 749

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatccattttttcatg-atatactgtgagtgtctctgtgcatgatggcatacctatgga 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 caatccattttttcatgtatatactgtgagtgtctctgtgcatgatggcatacctatgga 669

                                                                       
Query: 60  ggtcagagggaaagtcatgggagacagttgtctccttctatcctgtgggcaccagggatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggtcagagggaaagtcatgggagacagttgtctccttctatcctgtgggcaccagggatt 609

                                                                       
Query: 120 gcactcagggtctggcttggtggcaaatggctgatgtgatgaaccgttttgctggctccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcactcagggtctggcttggtggcaaatggctgatgtgatgaaccgttttgctggctccc 549

                                                                       
Query: 180 aatctattactttaaaaagaaggaaacagagagcttttggtgagtgaaggtagagaggga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aatctattactttaaaaagaaggaaacagagagcttttggtgagtgaaggtagagaggga 489

                                                                       
Query: 240 ttcaacttttatcttcctgcttctattagctgatagtgcacacatcacgtgagtatagtc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttcaacttttatcttcctgcttctattagctgatagtgcacacatcacgtgagtatagtc 429

                                                             
Query: 300 acatgtgctcactttcacacatgagaggtggggggaagagggatagggag 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acatgtgctcactttcacacatgagaggtggggggaagagggatagggag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)