BAC Information

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BAC

Clone NameMSMg01-073G01
Chromosome14 (Build37)
Map Location 29,958,398 - 30,070,819
singlet/doubletdoublet
Overlap geneCacna2d3, Ppia-ps15
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073G01.T7 (MSMg01no073_g01.b1)MSMg01-073G01.TJ (MSMg01no073_g01.g1)
ACCAG296692AG296693
length707716
length of high quality
(start - end)
317 (48 - 364)434 (78 - 511)
definitionCHROMAT_FILE: MSMg01no073_g01.b1 PHD_FILE: MSMg01no073_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:25 2005CHROMAT_FILE: MSMg01no073_g01.g1 PHD_FILE: MSMg01no073_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,070,508 - 30,070,819)(29,958,398 - 29,958,829)
sequence
AATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGCTTTAAAGTGTTTTCTTACTATTTTAGTATAAAATACTCT
CTAAGGTGAGGGGGAAAGACATGAACTCATAATCTGTAGAAGTATGCAAA
TGGTTGGATTGGCTGATAGGTTACCTTTTTATAATTAAACACTTTGACCA
GAAATCTGACAGGAAGACATTATGAAGAGACCCAGTTACTATGAGGCTTT
GGTTCCTGGTTTCGGAGGGTTTGGTCCATGCTCCCTTTCCATTTATCCTG
GGTCCATGGTGAGGGAGACCAAGATGGCAGATGCAGAAGAGCAGTGTGTG
GTGATGCCGGCGTTTTTTTGTCCCACCCACACCTGTTTACCTCATGGCAG
CCGGAAAGCAAAAAGAGAGGGAGTAAGAACCAAAGTAGCATCATTCCAGA
CCAGCATTTTTTTTTCCCTAGGCATAACCTCCTAAAGTTCCCACCTGCTG
GGGATGATGACTTCAATACAGGAACCCTTAAGAGATGCTGGTTCCAGACT
CTAACAGCTGGCAAAAGTGGAATGACTCTGGGTCTGAGTTTGTATTTGTA
AATTTAGGTTTGAATAAAGACAGGGACTTGCCCAATAATCTCAAGCGTCA
AGGACTTTGAATTTACCCCCATTCTGGCTTGCCAACCCAATGGATTTTTA
TTGCTGG
NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAATGTTCCCAGCCCACAGAG
ACACTGCCAGGAGGTCCCCGTGAGGAAGCTCCAACGCTTTGAAACGGACT
ACTTTAAGGGTTCTCCTTACCCTGCATCCTCACCATTCTTTCTATTTTCT
TGATGATACCCATTCTGATTGGGCTAAGATGGAATCGTAAAGTAGTTGTA
ATTTGCATTTCCCTTTTGGTTAAGGGTGTTGAAAACTTTCAAAAATACTT
ATCATGCACGTGCCTTTCTTCTTTCAAGAGCTGTACATTTTCAGTACCCT
ATTTATTCATGGGAACTGGAAGGAAGACCATGAGAGGTGGGAAAGGGATA
TAAAGGAAGGTGTTGGGGAGGGCAATGGGACAAACATGACAGCATGAAAG
AAGACAGGCTACTGAGTGTGAAAGGGTGTCAGAGCGTGTGTGTGGGTGGG
GTGGGGTGGCGTTCTCTACTCGTTTTACACTCCATATCATTATCTTTCTG
ATGTTCATATCCTCTTGTACTTAATTATTTTACTTGCTCTCTTTTTGATG
CGAATGTTTTAATAGACGAATTTAGTTCTATTTTTGATTACTCCCTATGT
TTTGTACACTTTTTTTTATTGTTCCTACGGCCTTCCCTCACATTTTTGCT
AACAGTCCATACCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_g01.b1 MSMg01no073_g01.b1 CHROMAT_FILE:
MSMg01no073_g01.b1 PHD_FILE: MSMg01no073_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:25 2005
         (317 letters)



>mm_chr14_30070305_30071021
          Length = 717

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgctttaaagtgttttcttactattttagtataaaatactctctaaggtgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcttgctttaaagtgttttcttactattttagtataaaatactctctaaggtgag 456

                                                                       
Query: 64  ggggaaagacatgaactcataatctgtagaagtatgcaaatggttggattggctgatagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggggaaagacatgaactcataatctgtagaagtatgcaaatggttggattggctgatagg 396

                                                                       
Query: 124 ttacctttttataattaaacactttgaccagaaatctgacaggaagacattatgaagaga 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 395 ttacctttttataattaaacactttgatcagaaatctgacaggaagacattatgaagaga 336

                                                                       
Query: 184 cccagttactatgaggctttggttcctggtttcggagggtttggtccatgctccctttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cccagttactatgaggctttggttcctggtttcggagggtttggtccatgctccctttcc 276

                                                                       
Query: 244 atttatcctgggtccatggtgagggagaccaagatggcagatgcagaagagcagtgtgtg 303
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 275 atttatcctgggtccatggtgagggagaagaagatggcagatgcagaagagcagtgtgtg 216

                       
Query: 304 gtgatgccggcg 315
           ||||||||||||
Sbjct: 215 gtgatgccggcg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_g01.g1 MSMg01no073_g01.g1 CHROMAT_FILE:
MSMg01no073_g01.g1 PHD_FILE: MSMg01no073_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:25 2005
         (434 letters)



>mm_chr14_29958198_29959031
          Length = 834

 Score =  804 bits (416), Expect = 0.0
 Identities = 428/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaatgttcccagcccacagagacactgccaggaggtccccgtgaggaagctccaacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatgttcccagcccacagagacactgccaggaggtccccgtgaggaagctccaacgc 260

                                                                       
Query: 61  tttgaaacggactactttaagggttctccttaccctgcatcctcaccattctttctattt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgaaatggactactttaagggttctccttaccctgcatcctcaccattctttctattt 320

                                                                       
Query: 121 tcttgatgatacccattctgattgggctaagatggaatcgtaaagtagttgtaatttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgatgatacccattctgattgggctaagatggaatcgtaaagtagttgtaatttgca 380

                                                                       
Query: 181 tttcccttttggttaagggtgttgaaaactttcaaaaatacttatcatgcacgtgccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcccttttggttaagggtgttgaaaactttcaaaaatacttatcatgcacgtgccttt 440

                                                                       
Query: 241 cttctttcaagagctgtacattttcagtaccctatttattcatgggaactggaaggaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctttcaagagctgtacattttcagtaccctatttattcatgggaactggaaggaaga 500

                                                                       
Query: 301 ccatgagaggtgggaaagggatataaaggaaggtgttggggagggcaatgggacaaacat 360
           |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||
Sbjct: 501 ccatgagaggtgggaaagggatgtaaaggaaggtgccggggagggcaatgggacaaacat 560

                                                                       
Query: 361 gacagcatgaaagaagacaggctactgagtgtgaaagggtgtcagagcgtgtgtgtgggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagcatgaaagaagacaggctactgagtgtgaaagggtgtcagagcgtgtgtgtgggt 620

                       
Query: 421 ggggtggggtgg 432
           ||||||||||||
Sbjct: 621 ggggtggggtgg 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)