BAC Information

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BAC

Clone NameMSMg01-073O13
Chromosome14 (Build37)
Map Location 80,482,918 - 80,483,444
singlet/doubletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073O13.T7 (MSMg01no073_o13.b1)MSMg01-073O13.TJ (MSMg01no073_o13.g1)
ACCAG297092AG297093
length726733
length of high quality
(start - end)
614 (35 - 648)556 (78 - 633)
definitionCHROMAT_FILE: MSMg01no073_o13.b1 PHD_FILE: MSMg01no073_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:07 2005CHROMAT_FILE: MSMg01no073_o13.g1 PHD_FILE: MSMg01no073_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGGATCCGCGGAATTC
TTTGTTTATCTCTGTACTCCACTTTTTAACAGGGTTATTTGGTTCTCTGG
AGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATTG
GATGTAGGGTTGGTAAAGATTTTTTTCCGAACTATTGGTTGCCATTTTGT
CCTATTCACAGTGTCCTTTGCCTTACAGTAGCTTTGCAATTTTATGAGTT
CTCATTTGTCAATTCTTGATCTTAGACCCAGCTATACCACTCATGAGCAT
ATACCCAGAAGATGCTCCAACATGTAATAAGGATACATGCTCGACTATGT
TCATAGCATCCTTATTTATAATAGCCAGAACCTGGAAAGAAACCAGATGT
CCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATAGA
GTACTACTCAGCTATTACAAAAAATGAATTCATGAAGTTCTTAGACAAAT
GGATGGAACTAGAAAATATCATCCTGAATGATGTAACTCAGTAACAAAAA
AACACACATGGTATGCACTCACTGTAAGTGAATATTAGCCCAGAAGTTCG
GAATACCCAAGATACAATTCACAGACCACATGAAGCTCAAGAAGGAAGAC
CATATTGTGGATACTTCGGTCCTTCTTAGAAGAGGGACCATTATACCCAT
GGGACCAGATCCATAGATAAAGCTCG
ACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTCCTTTACAGCAGGTTTA
TCCCAAGGAGAATTTTGAATAAGTACATAAAAATGGATGTACAAGAAAGT
TCATTAAAGCATTGATTATAATATCAAAAACTTACAATTGGCATAATTAT
TATTCAATAGGGATTAGTTAAATAAATTACAGTATGTCTCACAGAGGAAT
ATTGTGCAGTCAATAAAAATGATGATGTGGATCTATATTTATTGACACAG
AAATTAAAAAAAACACCGCCTACTATTGAATAAGAAAGCAAGATGTGTGG
CTGTTGGTGCAGCGGTACTCAGTGCAGGAGGTAATGTGTGTGTGTAACTG
GCACCAAGTCAGATAGAAGGATGTTTATCAAATGGTACAATAGGTAAGTC
CGGGTAGTAAGAATGCAGATAATTTCCCCTTTTTCTCTGTGAATCCCAAG
GTCGTTCCAATTTTAAGAGTAGGCTGCATTATTTGATCAGCAGAATAAAG
TTATTTCATATTGAAGAAAATACAATAAAAAGCAAAGTAGCTGCACTCCA
TTCCTTTTCCGTGCCAGTGCCCTCCCCTGAAGCTGATAAGATGGCTCTGA
TCAGTCAGGAACATGGTTGTACTGACTCATTCCTCAGCATGAGGCTGGAC
TGCTAAATTCTGATGTGGAAAAAGAAAGATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_o13.g1 MSMg01no073_o13.g1 CHROMAT_FILE:
MSMg01no073_o13.g1 PHD_FILE: MSMg01no073_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:07 2005
         (556 letters)



>mm_chr14_80482489_80483444
          Length = 956

 Score =  951 bits (492), Expect = 0.0
 Identities = 519/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  caaggagaattttgaataagtacataaaaatggatgtacaagaaagttcattaaagcatt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 caaggagaattttgaataagtacataaaaatggatgtacaagaaagttcattaaagcatt 897

                                                                       
Query: 87  gattataatatcaaaaacttacaattggcataattattattcaatagggattagttaaat 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gattataatatcaaaaacttacaattggcataattattattcaatagggattagttaaat 837

                                                                       
Query: 147 aaattacagtatgtctcacagaggaatattgtgcagtcaataaaaatgatgatgtggatc 206
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aaactacagtatgtctcacagaggaatattgtgcagtcaataaaaatgatgatgtggatc 777

                                                                       
Query: 207 tatatttattgacacagaaattaaaaaaaacaccgcctactattgaataagaaagcaaga 266
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 776 tatatttattgacacagaaatt-aaaaaaataccgcctactattgaataagaaagcaaga 718

                                                                       
Query: 267 tgtgtggctgttggtgcagcggtactcagtgcaggaggtaatgtgtgtgtgtaactggca 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgtgtggctgttggtgcagcggtactcagtgcaggaggtaatgtgtgtgtgtaactggca 658

                                                                       
Query: 327 ccaagtcagatagaaggatgtttatcaaatggtacaataggtaagtccgggtagtaagaa 386
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 657 ccaagtcagatagaaggatgcttatcaaatggtacaataggtaagtctgggtagtaagaa 598

                                                                       
Query: 387 tgcagataatttcccctttttctctgtgaatcccaaggtcgttccaattttaagagtagg 446
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 597 tgcagataacttcccctttttctctgtgaatcccaaggtcgttccaattttaagagtaga 538

                                                                       
Query: 447 ctgcattatttgatcagcagaataaagttatttcatattgaagaaaatacaataaaaagc 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ctgcattatttgatcagcagaataaagttatttcatattgaagaaaatacaataaaaagc 478

                                                           
Query: 507 aaagtagctgcactccattccttttccgtgccagtgccctcccctgaa 554
           |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 477 aaagtagctgaactccattccttttctgtgccagtgccctcccctgaa 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)