BAC Information

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BAC

Clone NameMSMg01-074B02
Chromosome14 (Build37)
Map Location 20,130,360 - 20,130,767
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996
Downstream geneEG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074B02.T7 (MSMg01no074_b02.b1)MSMg01-074B02.TJ (MSMg01no074_b02.g1)
ACCAG297210AG297211
length705764
length of high quality
(start - end)
412 (49 - 460)481 (138 - 618)
definitionCHROMAT_FILE: MSMg01no074_b02.b1 PHD_FILE: MSMg01no074_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:19 2005CHROMAT_FILE: MSMg01no074_b02.g1 PHD_FILE: MSMg01no074_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCAGCTTTGAACTCCATAATGAAGCACATTCTCAAACA
AACAAACCAAGCAGTTAATACCCAAGTGCCTAAACTTTACAGCATGCCAA
TACAGTGCATTATACAGTATCTGGTATTTCCCTTTCTGAATGTGTGAGTG
AGACCTGAAACTTCTGTTGTTGCCCAGCCTCACAGAGAATATAACAGGCT
TAGCTCTGAATGCGTCTAAACTGTGCTCTGTCTGCCCTACATAGGGGTGG
CTAGTCTCCTGGGTTTTGTGGGGATTTAGAAGGCTGTTCTCAAGACTACC
AAGGAACCAGAGGATGAGTGATAATAATCAAGAGGATAAATGATTGTTTA
AAAAAAATAGCCAGTATTTTCTTATATGGTTCAAATTGGCTGAGTGATTT
TTTCCACCAGCCAGTATGAAATACAAAAGGCTAGAAAGTTTTGGTAAGTA
GAAAAGTAATTTCTTCCAGGATAACATTTACATATTTATTAATATCTACT
CATAGATATTTAACACCCTATTCCTGAGAGTAGTACATTTCTAAGGACAA
AATGAGTCCTTATTGACTTCATTACCCCACACAAGATGCATATGAACACC
TAAAAATCTTAATGGAACAAGTTGCTTTGTACAATATATCGCCTTTATCA
TGCCN
NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCNCCCCCCCNNNCNCNCCC
CAACACTCCNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTACAACCCCAT
GGGACAAGGAATAGTTGAACGTGCTCATTGCACCTTAAAAATTGGCTTTT
AAAGACAAAACAGGGGCAGTTATATCCCTCAAGGTCACCAAAGGCACATC
TTGCCTTTGCTTTATTTGTTCTAAATTTTTTGAAAACTGATGTTAAAGGT
CAGTCTTCAGCTGATCGCCACTGGCATCCAGTTACTCATGGTTAAGTGGA
GGGACCCAGTAACTAAAGATTGGAAGGGTCCTGATCTGGTTCTAATCTGG
AGAAGAGGTGTGGTCTGTTTTTTCACAAGAAGAAGATGGAGCACGATGGC
TGCCTGAGAGATTAATTCGTCAACTGGACACAGAAACTGAATCTTCTAGT
AAGTATGACTCTGATTATGGCTAAAATCCTCTTTAGCCAAAATGTCAGTT
CAGAGCACAGGCTCCACTCCCAGAGAAGCTGTGGTCTTCCTGCAATTCTC
AAAGCCATCTCCCCCACAAGGAGGCCAGATACTGAGCTTGAGCCTTGCTA
ATTTGCAACTGAATAAAGTACCTGGTACTTCCCCAAAAGAAGCTTTTGTA
CTGTTACCTTTCACTGTCTGGATTTTGTTTTTCAAGCAGGTCAATCAACA
CTCTTTAGCCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_b02.b1 MSMg01no074_b02.b1 CHROMAT_FILE:
MSMg01no074_b02.b1 PHD_FILE: MSMg01no074_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:19 2005
         (412 letters)



>mm_chr14_20130156_20130967
          Length = 812

 Score =  781 bits (404), Expect = 0.0
 Identities = 407/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggccagctttgaactccataatgaagcacattctcaaacaaacaaaccaagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaattcaaggccagctttgaactccataatgaagcacattctcaaacaaacaaaccaagc 553

                                                                       
Query: 65  agttaatacccaagtgcctaaactttacagcatgccaatacagtgcattatacagtatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agttaatacccaagtgcctaaactttacagcatgccaatacagtgcattatacagtatct 493

                                                                       
Query: 125 ggtatttccctttctgaatgtgtgagtgagacctgaaacttctgttgttgcccagcctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtatttccctttctgaatgtgtgagtgagacctgaaacttctgttgttgcccagcctca 433

                                                                       
Query: 185 cagagaatataacaggcttagctctgaatgcgtctaaactgtgctctgtctgccctacat 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 432 cagagaatataacaggcttagctctgaatgcgtctgaactgtgctctgtctgccctacat 373

                                                                       
Query: 245 aggggtggctagtctcctgggttttgtggggatttagaaggctgttctcaagactaccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggggtggctagtctcctgggttttgtggggatttagaaggctgttctcaagactaccaa 313

                                                                       
Query: 305 ggaaccagaggatgagtgataataatcaagaggataaatgattgtttaaaaaaaatagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggaaccagaggatgagtgataataatcaagaggataaatgattgtttaaaaaaaatagcc 253

                                                           
Query: 365 agtattttcttatatggttcaaattggctgagtgattttttccaccag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agtattttcttatatggttcaaattggctgagtgattttttccaccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)