BAC Information

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BAC

Clone NameMSMg01-074F02
Chromosome14 (Build37)
Map Location 95,609,305 - 95,609,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783, LOC677613
Downstream geneLOC100043784, LOC382931, 4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074F02.T7 (MSMg01no074_f02.b1)MSMg01-074F02.TJ (MSMg01no074_f02.g1)
ACCAG297402AG297403
length706686
length of high quality
(start - end)
612 (47 - 658)528 (56 - 583)
definitionCHROMAT_FILE: MSMg01no074_f02.b1 PHD_FILE: MSMg01no074_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:39 2005CHROMAT_FILE: MSMg01no074_f02.g1 PHD_FILE: MSMg01no074_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCTTAACAGGGACGGGTTTTTGTTTTCTCTCTCTCTTGCTTCT
TACACTCCTGCTCCTAAAGATGTAAGCAATAAAGCTTTGCCGCAGAAGAT
TCTGGTTTGTTGCGTCTTTCCTGGCCGGTCGTGAGAACGCGTCTAATAAC
ATAACTCCAACCAAGCAAGTTAAAGACCTATGTGACAAGAACTAGACGTC
TGTGAAGAAGAAATCTGTGATAGTATCAGAACATGGACAGATCTCCCATG
CTCATGAATGGGCAGGATTTACATAGTAAAAATGGCCATTTTTTACCAAA
AGCAATCTACAGATTCAAAAACTTCCCATCAAAATTCCAACAGAGTTCTT
TCCAGATCTTCAAAGAATGACATTTAACTTCATACGGAAAACCAAAAGAG
GCAGGGTAGCTAAAACACTCTTGTTCAAAACGGGAATATCAATAAAGTTA
TTGCCATCTCTGAGTTCAAGCACTACTACAGAAATATGTTAATAATAACC
ACATGGCAATGGCATAAAACAGACAGGCAGATCAATGGAATGTAATCTTT
AATGGAATCAAAGACCCAGAATAAATTTACCCTCCTTTGGACATTTTATT
TTTGACAAAGAAGCCAAAATTATACAATGAAAAAAAAAAGGGTCTTCAAC
AACTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTGTGAAACCTTAGGTCCATGCAAATACATAGAAAGTAGGACTA
AACAACTGAAGATATAAGGAAACATTAAAATAAATTAAACTGAAGAGATC
AAATTATTTAAGCACCAAATTATATGCATATATGTACACATACACACACA
CACACACACTCACACACACACATACACACACACACACACACACACATATA
TATGTTTAGTTTAGTTTTAAAATATGTGATTTTTCACTTTTAGTGAATGA
ATAAAATGAGCTAAAATATGGTAGTTTTCTTAGGGTTTTACTGCTGTGAA
CAGACATCATGACCAAGGCAAGTCTTATAAAGGACATCATTATTTGGGGC
TGGCTTACAGGTTCAGAGGTTCACTTCAGTATCATCAAGGCAGGCACAGT
ACAGGAGGAGCTGAGAGTTCTATATCTGCATCTAAAGACTGCTAACAGAA
TACTGACTGTCAGTCAGCTTAGGAATAGGCTTAAAGCCCAAGCCCATAGT
GACACACCTACTCCAACAAGGCCACACCTTCCAATAGTTCCAGTCCCTGT
GTCAAGCATACACAAACCATCACAGTAGTTCATTCATTCACAAATTATTG
ACTGGGAAAAGCAATGTCAAACCATGGGTACAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_f02.g1 MSMg01no074_f02.g1 CHROMAT_FILE:
MSMg01no074_f02.g1 PHD_FILE: MSMg01no074_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:39 2005
         (528 letters)



>mm_chr14_95609105_95610032
          Length = 928

 Score = 1009 bits (522), Expect = 0.0
 Identities = 526/528 (99%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtgaaaccttaggtccatgcaaatacatagaaagtaggactaaacaactgaagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtgaaaccttaggtccatgcaaatacatagaaagtaggactaaacaactgaagatat 260

                                                                       
Query: 61  aaggaaacattaaaataaattaaactgaagagatcaaattatttaagcaccaaattatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaaacattaaaataaattaaactgaagagatcaaattatttaagcaccaaattatat 320

                                                                       
Query: 121 gcatatatgtacacatacacacacacacacacactcacacacacacatacacacacacac 180
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatatatgtacacat--acacacacacacacactcacacacacacatacacacacacac 378

                                                                       
Query: 181 acacacacacatatatatgtttagtttagttttaaaatatgtgatttttcacttttagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acacacacacatatatatgtttagtttagttttaaaatatgtgatttttcacttttagtg 438

                                                                       
Query: 241 aatgaataaaatgagctaaaatatggtagttttcttagggttttactgctgtgaacagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgaataaaatgagctaaaatatggtagttttcttagggttttactgctgtgaacagac 498

                                                                       
Query: 301 atcatgaccaaggcaagtcttataaaggacatcattatttggggctggcttacaggttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atcatgaccaaggcaagtcttataaaggacatcattatttggggctggcttacaggttca 558

                                                                       
Query: 361 gaggttcacttcagtatcatcaaggcaggcacagtacaggaggagctgagagttctatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaggttcacttcagtatcatcaaggcaggcacagtacaggaggagctgagagttctatat 618

                                                                       
Query: 421 ctgcatctaaagactgctaacagaatactgactgtcagtcagcttaggaataggcttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgcatctaaagactgctaacagaatactgactgtcagtcagcttaggaataggcttaaa 678

                                                           
Query: 481 gcccaagcccatagtgacacacctactccaacaaggccacaccttcca 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcccaagcccatagtgacacacctactccaacaaggccacaccttcca 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)