BAC Information

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BAC

Clone NameMSMg01-074H01
Chromosome14 (Build37)
Map Location 111,566,995 - 111,567,246
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074H01.T7 (MSMg01no074_h01.b1)MSMg01-074H01.TJ (MSMg01no074_h01.g1)
ACCAG297496AG297497
length709748
length of high quality
(start - end)
264 (46 - 309)290 (138 - 427)
definitionCHROMAT_FILE: MSMg01no074_h01.b1 PHD_FILE: MSMg01no074_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:48 2005CHROMAT_FILE: MSMg01no074_h01.g1 PHD_FILE: MSMg01no074_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGC
GGAATTCTTTGTTTTCATTTAAAGCTTACCATGGTTGAGTTTGATTTGTT
TTGTATGTATATATGTAATATATTTATATGAAACACACACACACACACAT
ATATATATATGTACATATATATATATGAAATGATAAGTTTCAGTTGCTAT
GATCAAGAAATGATTAAAACAGTAGCAACAAAACAAAAAACAACCTAGCA
CGCCCACTATTAGTCACCATACATATTGTTAAGTGTATTTGTTAGCTCTG
ACTTTGCAAGCCGGTAAAAAGAAACTGCTGTAATGTAATTCAGTGTTTTT
GGCTAACCATATATCATTATTTCTCCACACCTTATCCAATTTTATTATAT
TCTGTGATTTCAATTTACCCCACCAGATCACTTATTGTTTATTTGTAAGG
TCTTTTGTTAAATTGCTTATGTTAAAATATGCCTTTCTGAAATATTAATT
TTTCTAACATCTGCTATACTATCTCTGCCCCAATTTATTAATATACCATT
TTTGCCCCATTAATATTTCATTATTAAACAATATAATTTTATAACATAAT
CAATATTTTCTAAATTAATTTTATTATTCAATATTTTTTCACCATCCTTA
TTCTGTCTCCCTTACTTCTAATGCAATAATATTATATTTCGTAATCACTA
TCAACCACC
TTTTTTTTNTNNTTTTTTTTTTTTTTTTTTTCTCTCCCCCGCCCCCCACT
ATTAAATCCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCTGACAAT
AGATTTGTGTGGACATGTCATGTTGATAATCTTTTTATTTTTTTCATCAT
GATTTTCTCTCCCCCAGATCTTATATTATTTTTGTCCCCTCCACAGTGAT
GTCTCCTACATCTTGGACAGGCTTAATAAAAAGTACCCCATTTATGGTCA
AGCTTTATATCATATATTCTTGCCACTTTGATCAGTTATGACTCAGTTGA
CTGTTGCATGCATCAGTAAAAATTTTTTCATATGAAACCTGAGCAACAAT
AATCTTTGGGTCTAATCACTCCTTAAAAGGTTGTTTTATATCACGTCTAT
TAGTAATAATATTACTAGGTCTTCTTCCACCAACTATAAACTCCCAGCCA
TGGTTTCTTGGAAGCTTTGATAAACCAGCGTCTGTTCTTTTTATGTGAAG
AATTCTAATCCTATAAAAATAAGTGGCTGGTAAACCTCTCAAAATTATGC
CTCTGATGTACCAGTGATTCCATTTAACTACTAACCCTAGTATTTGTATC
TTGATGAATGTACACCCTCATTGCATATTGCCTAATGGCTTTTTCTCTTT
GGGCTCCCTTTTGTAAGCGAATATAACCCACTCATTTTATTCCGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_h01.b1 MSMg01no074_h01.b1 CHROMAT_FILE:
MSMg01no074_h01.b1 PHD_FILE: MSMg01no074_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:48 2005
         (264 letters)



>mm_chr14_111566664_111567327
          Length = 664

 Score =  395 bits (204), Expect = e-114
 Identities = 242/258 (93%), Gaps = 6/258 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttgttttcatttaaagcttaccatggttgagtttgatttgttttgtatgtata 66
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 583 gaattctttgtttttatttaaagcttaccatggttgagtttgatttgtcttgtatgtata 524

                                                                       
Query: 67  tatgtaatatatttatatgaaacacacacacacacacatatatatatatgtacatatata 126
           |||||||||||||||||||||||||||||||||||||| | | |       ||| | |||
Sbjct: 523 tatgtaatatatttatatgaaacacacacacacacacacacaca------cacacacata 470

                                                                       
Query: 127 tatatgaaatgataagtttcagttgctatgatcaagaaatgattaaaacagtagcaacaa 186
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 469 tatatgaaatgataagtttcagttgctatggtcaagaaatgattaaaacagtagcaacaa 410

                                                                       
Query: 187 aacaaaaaacaacctagcacgcccactattagtcaccatacatattgttaagtgtatttg 246
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 409 aacaaaaaacaacctagcacgcccactatcagtcaccatacatattgttaagtgtatttg 350

                             
Query: 247 ttagctctgactttgcaa 264
           ||||||||||||||||||
Sbjct: 349 ttagctctgactttgcaa 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)