BAC Information

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BAC

Clone NameMSMg01-075F12
Chromosome14 (Build37)
Map Location 109,112,659 - 109,113,172
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757, EG668761
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075F12.T7 (MSMg01no075_f12.b1)MSMg01-075F12.TJ (MSMg01no075_f12.g1)
ACCAG298184AG298185
length686695
length of high quality
(start - end)
580 (56 - 635)514 (75 - 588)
definitionCHROMAT_FILE: MSMg01no075_f12.b1 PHD_FILE: MSMg01no075_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:59 2005CHROMAT_FILE: MSMg01no075_f12.g1 PHD_FILE: MSMg01no075_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTNNNTCGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCTGTTTACTTCTGTATCCCATTTTTAAATTGGGT
TATTTGGGTTGTTGGTGTCTAACTTCTTGAGTTCTTTGTAAATTTTGCTT
ATTAGTCCCCTGCCAAGTGTAGTGTTGGTGAAGATTCTTTCCCAATCTGT
AGGCTGAAAATTTGTCCTATTAATAGTATCCTTTGCCTTACAGAAGACTT
GCAGTTTCATGAGGTGTTACTTATCAATTTTTATCTTAAAGCCTAAGCAA
TTGGTACTCCCTTCAGGAAACTGTCTCCTGTACCAATGAGTTCAAGTGTA
TTTTCCACTTTCTCTTCTATGAAATTTAGTGTATCTCATTTTATGTTCTG
GTCCTTGATCCACTTGGACTTGAGTTTTGTGGAGGGTTATAAATATGGAT
CTATATTGATTCTTCTACATATAGACATCCAATACCATTTGTTGAAGATC
CATTCCTTTTTCCATTGCATGATTTCGGCATCTTTATAAGAAAAAAATCA
GGTGTCCAGACGTATATGGGTTTACTTCTTGGTCTTCAATTTGATTCCAC
TGACCAACATGTCTGTTTCTGTACCAAAACTGGAATTTTTAAAATCATTA
TCGCTGTGTAGTGCACTTGAGGTCAGTGGGGGGAGG
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTATTTTGTTTTTTGTTATTTACT
GTATCTACTTGTCATCTCATGATTTTCAAATAATGTGTGACCATTGGCCA
TGTAAGAAACCCCAATTCTCTAAAGTTCAGATTACTGTGACTTGCCCTGT
GAGTTGGATAACTAGGTCTCTTAGCCATTGAACAGTTTCTCTAGCCTTAG
AGTAGTGTTTTTAATGCCATCACTATATTACTCATTGTCCATTAGGTATT
TGGAGTGTTCTAATCAGACATTGACGGATGCTCATCAGTTGTTAAGGATT
CCCCAACCTCTGATGTGTCCTAATACAGAAAATAGAAACTGATTTGTGTT
TTTGTTATATACAACATTTAGAACAACACATGGAATATTACTCTTCTTAC
CTGTATTACCCATTCTTGATTCCAGGACTGATACCATTCTGTTTGTTTTC
AGTATAGTCCATCCAGGCTTATATTTATCTTTTGATAACCAGAGTTTATT
TACTTACATTTCATGAATAATGCATATTTTGCTGTTGTTTCATCTTGGAT
GTAAAAAGGATGAGCAAGAGGCATATACAACTTACAAAGCTAATCAACCC
CCCAAACTTTAAAGACCCTCGCGCCCTCCTTGAAAGAAACCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_f12.g1 MSMg01no075_f12.g1 CHROMAT_FILE:
MSMg01no075_f12.g1 PHD_FILE: MSMg01no075_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:59 2005
         (514 letters)



>mm_chr14_109112459_109113372
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttattttgttttttgttatttactgtatctacttgtcatctcatgattttcaaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttttattttgttttttgttatttactgtatctacttgtcatctcatgatttgcaaataat 260

                                                                       
Query: 61  gtgtgaccattggccatgtaagaaaccccaattctctaaagttcagattactgtgacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgaccattggccatgtaagaaaccccaattctctaaagttcagattactgtgacttg 320

                                                                       
Query: 121 ccctgtgagttggataactaggtctcttagccattgaacagtttctctagccttagagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgtgagttggataactaggtctcttagccattgaacagtttctctagccttagagta 380

                                                                       
Query: 181 gtgtttttaatgccatcactatattactcattgtccattaggtatttggagtgttctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtttttaatgccatcactatattactcattgtccattaggtatttggagtgttctaat 440

                                                                       
Query: 241 cagacattgacggatgctcatcagttgttaaggattccccaacctctgatgtgtcctaat 300
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cagacattgatggatgctcatcagttgttaaggattccccaacctctgatgtgtcctagt 500

                                                                       
Query: 301 acagaaaatagaaactgatttgtgtttttgttatatacaacatttagaacaacacatgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaaaatagaaactgatttgtgtttttgttatatacaacatttagaacaacacatgga 560

                                                                       
Query: 361 atattactcttcttacctgtattacccattcttgattccaggactgataccattctgttt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 atattactcttcttacctgtattacccattcttgattccaggactgatacaattctgttt 620

                                                                       
Query: 421 gttttcagtatagtccatccaggcttatatttatcttttgataaccagagtttatttact 480
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 621 gttttcagtatagtccatccaggcttgtatttttcttttgataaccagagtttatttact 680

                                             
Query: 481 tacatttcatgaataatgcatattttgctgttgt 514
           |||||||||||||||||| |||||||||||||||
Sbjct: 681 tacatttcatgaataatgtatattttgctgttgt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)