BAC Information

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BAC

Clone NameMSMg01-075G13
Chromosome14 (Build37)
Map Location 50,239,824 - 50,240,328
singlet/doubletsinglet
Overlap genenone
Upstream geneOtx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075G13.T7 (MSMg01no075_g13.b1)MSMg01-075G13.TJ (MSMg01no075_g13.g1)
ACCAG298233AG298234
length706704
length of high quality
(start - end)
520 (38 - 557)629 (76 - 704)
definitionCHROMAT_FILE: MSMg01no075_g13.b1 PHD_FILE: MSMg01no075_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:04 2005CHROMAT_FILE: MSMg01no075_g13.g1 PHD_FILE: MSMg01no075_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCACTGTGTAGCTCAGGATGCCCTTGAGCTCCTGATCCTACTGT
ATCTACAACTGTAATGCTGCATATGTAATCTACATATGTAATTACAGACA
GGCACCACTATGCCTGTGCTTCGCTCTGACTTAACTTTATGTGAGTGTGC
ATGTGTACTTGTGTGTGTGCATGCTGCATGTATGCATCAAGTTTAGGAAA
ATTTTGGGTATTAAATCTATAAATATTTTCTGTACAAGTCTCTTTTTAAG
GAACTCAAATGATATGAGTATTGTAATTCATGATTGCACCATGGCCTATA
AGGCTCTTAAATTTCTATCCACTATTTTATCTGTTCTTCTGATTAGAAGT
TTCTAGTCATTTGTCTTTTAAGCCTATTGATTTTTCCCTCTGTCATTTCT
AATTTGGTGATGAGTCCATCACTGTGTTTTACATTTTCAGGGTTTGATAT
TATATTTTGAATTCCAAACTTTCTATTTAAAAAAAAAAAGCTTGTTCCTC
TGCTGATAATGTCTACTTCTGCATGCAGCCCACAGTGCTCATTTTGACCT
CATGAAGGCAACTGTACGAGTAAGCACCTCTCTGTCTTTTATGTACTAAT
CCTCAACTTCTGGCCCTTCGAAGTATGCTATTCTTGATTACTGCCTTCTC
CCTTTT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGGGAAAATACAAGGAGGGGC
ACTTCGTTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTG
AATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTT
AGTAAAGCTCAAAGCACACATTGCACCTCACACAATAATAGTGGGAGACT
TCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAAC
AGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGAATCTGACAGA
TATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAG
CACCTCACGGGACCTTCTCCAAAACTGACCACATAATAGGTCACAAAACA
GGTCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGA
TCACCATGCACTAAGAGTGATCTTCAATAACAAAAAAAAATAACAGAAAG
CCAATACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGT
CAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAA
ATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTA
AGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_g13.b1 MSMg01no075_g13.b1 CHROMAT_FILE:
MSMg01no075_g13.b1 PHD_FILE: MSMg01no075_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:04 2005
         (520 letters)



>mm_chr14_50239737_50240656
          Length = 920

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 15  ggaattcactgtgtagctcaggatgcccttgagctcctgatcctactgtatctacaactg 74
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggaattcactgtgtagctaaggatgcccttgagctcctgatcctactgtatctacaactg 533

                                                                       
Query: 75  taatgctgcatatgtaatctacatatgtaattacagacaggcaccactatgcctgtgctt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taatgctgcatatgtaatctacatatgtaattacagacaggcaccactatgcctgtgctt 473

                                                                       
Query: 135 cgctctgacttaactttatgtgagtgtgcatgtgtacttgtgtgtgtgcatgctgcatgt 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cgctctgacttaactttatgtgagtgtgcatgtgtacttgtgtgtgtgcatgctgcatgt 413

                                                                       
Query: 195 atgcatcaagtttaggaaaattttgggtattaaatctataaatattttctgtacaagtct 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgcatcaagtttaggaaaattttgggtattaaatctataaatattttctgtacaagtct 353

                                                                       
Query: 255 ctttttaaggaactcaaatgatatgagtattgtaattcatgattgcaccatggcctataa 314
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 ctttttaaggaactcaaatgatatgagtattggaattcatgattgcaccatggcctataa 293

                                                                       
Query: 315 ggctcttaaatttctatccactattttatctgttcttctgattagaagtttctagtcatt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggctcttaaatttctatccactattttatctgttcttctgattagaagtttctagtcatt 233

                                                                       
Query: 375 tgtcttttaagcctattgatttttccctctgtcatttctaatttggtgatgagtccatca 434
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgtcttttaagtttattgatttttccctctgtcatttctaatttggtgatgagtccatca 173

                                                                       
Query: 435 ctgtgttttacattttcagggtttgatattatattttgaattccaaactttctatttaaa 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ctgtgttttacattttcagggtttgatattatattttgaattccaaactttctatttaaa 113

                                    
Query: 495 aaaaaaaagcttgttcctctgctga 519
           ||||||||| |||||||||||||||
Sbjct: 112 aaaaaaaagtttgttcctctgctga 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)