BAC Information

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BAC

Clone NameMSMg01-075M09
Chromosome14 (Build37)
Map Location 55,282,136 - 55,421,298
singlet/doubletdoublet
Overlap geneAcin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
Upstream geneA430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24
Downstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M09.T7 (MSMg01no075_m09.b1)MSMg01-075M09.TJ (MSMg01no075_m09.g1)
ACCAG298510AG298511
length705703
length of high quality
(start - end)		416 (76 - 491)500 (80 - 579)
definitionCHROMAT_FILE: MSMg01no075_m09.b1 PHD_FILE: MSMg01no075_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:31 2005CHROMAT_FILE: MSMg01no075_m09.g1 PHD_FILE: MSMg01no075_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,420,886 - 55,421,298)(55,282,136 - 55,282,635)
sequence
NNCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCAGGCCAGATACCCATAGTTCTGCTAAAAATCTGCTGCTCC
ACCGACATCCACATGGCCTCCAGGGGCGGCATGAACCATGGAGGTCTTTC
AAGGATGCTCAATCCAGAAAATGAACTAGTCTCCATCTTAGACATCCTGA
GATTGCTCAGAGCCAGGGCTTTTGGGCATCTGGGCAGTTTGTTTGAGTGT
AAAACCTGGGTAAGATCCCACTGCTGCAGGCCACCCCGATGGCCCTATTC
AACAAGGACATGCTCCCTGGTCCTCTGGAGTCTGCTCCCACACCAGTGCT
GCCAGAGTCCTTCAACCATAGCCCAGAAAACATGGAACTGGGTCATCCCA
GTGTGGTGGTTTGAATGAGAATGCCCCACCCCCCATAGGCTCATATATTT
GAAGGCTTGGTCCTCAGTGCAACTATTTGAAAAGATTACGAGGTGTGGCC
TTGGAGTACGTATGACCTTGTTGGGGGATGTGTGTCATTACAGGTGGGCT
CTGAGGTTTTAAAATCCCATACCATGCCCCCCTTACACATACACATCTGC
CTGGTGTCAGCAGACCGGAATGTAAAGCTCCCCAGCTACTGCTCCAGCGC
CATGACTGTCTGCTCTCCCCCCTTGATCATGGGCTTAACCCTCTGAAATC
CGTAA

NCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCTGATGACCTGAGTTC
TAGCCCTGACAACTACATGGCGGAAGAACCAAGACTTGGCCTCTGACCTC
ATGTACACTCGCCAATCCTCCAACAAACAAACAATTAAGTATTCTCAACC
GTCTGCATTTCTTGACTGTCGTCCAGACAGATCTCTGAATTTGATGGTGA
AGACACTCACACACCTGTAATCCTAGCAAGTGCGAGGCGAAGGCAGAACC
ATTAGTCTGACGCTGGCCTGTAAGATGCTGTCTCAAAAACACTGAACAAT
GGGAAACTCCGGCCTACCTGCTCCGGCTGCAACCTCTGGATCACGTGCTG
TTGCTCTGGCTCAGGATGGCTCAGATGCCTCCCCCGGACAGATGCTGAGA
ACGTGGGAGCCTTCTCCTTTGGTTCAAGGACCTGCAGCTGTGGCCCAGAT
GGAGCTGCAGCCTCCTGACCACAAGAGGGATCTTTGGTTTCAGTGTAGCT
GGCGTTGCTATCTCTGGAGACTCCAGGGCTCAGAGACTAAAAACACAAAA
GGAAACACAAAAGGGAAACTATTTTATACTCCAAATATTTCGGAAAGATT
AGCACGAGTAGATCCTGCATATACAGGAGACCACTATATTTTTTCCAGTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m09.b1 MSMg01no075_m09.b1 CHROMAT_FILE:
MSMg01no075_m09.b1 PHD_FILE: MSMg01no075_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:31 2005
         (416 letters)



>mm_chr14_55420701_55421516
          Length = 816

 Score =  799 bits (413), Expect = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctgctaaaaatctgctgctccaccgacatccacatggcctccaggggcggcatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agttctgctaaaaatctgctgctccaccgacatccacatggcctccaggggcggcatgaa 539

                                                                       
Query: 61  ccatggaggtctttcaaggatgctcaatccagaaaatgaactagtctccatcttagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccatggaggtctttcaaggatgctcaatccagaaaatgaactagtctccatcttagacat 479

                                                                       
Query: 121 cctgagattgctcagagccagggcttttgggcatctgggcagtttgtttgagtgtaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctgagattgctcagagccagggcttttgggcatctgggcagtttgtttgagtgtaaaac 419

                                                                       
Query: 181 ctgggtaagatcccactgctgcaggccaccccgatggccctattcaacaaggacatgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctgggtaagatcccactgctgcaggccaccccgatggccctattcaacaaggacatgctc 359

                                                                       
Query: 241 cctggtcctctggagtctgctcccacaccagtgctgccagagtccttcaaccatagccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cctggtcctctggagtctgctcccacaccagtgctgccagagtccttcaaccatagccca 299

                                                                       
Query: 301 gaaaacatggaactgggtcatcccagtgtggtggtttgaatgagaatgccccacccccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaaaacatggaactgggtcatcccagtgtggtggtttgaatgagaatgccccacccccca 239

                                                                
Query: 361 taggctcatatatttgaaggcttggtcctcagtgcaactatttgaaaagatta 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 taggctcatatatttgaaggcttggtcctcagtgcaactatttgaaaagatta 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_m09.g1 MSMg01no075_m09.g1 CHROMAT_FILE:
MSMg01no075_m09.g1 PHD_FILE: MSMg01no075_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:31 2005
         (500 letters)



>mm_chr14_55281936_55282835
          Length = 900

 Score =  959 bits (496), Expect = 0.0
 Identities = 499/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagctgatgacctgagttctagccctgacaactacatggcggaagaaccaagacttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagctgatgacctgagttctagccctgacaactacatggcggaagaaccaagacttgg 260

                                                                       
Query: 61  cctctgacctcatgtacactcgccaatcctccaacaaacaaacaattaagtattctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgacctcatgtacactcgccaatcctccaacaaacaaacaattaagtattctcaac 320

                                                                       
Query: 121 cgtctgcatttcttgactgtcgtccagacagatctctgaatttgatggtgaagacactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtctgcatttcttgactgtcgtccagacagatctctgaatttgatggtgaagacactca 380

                                                                       
Query: 181 cacacctgtaatcctagcaagtgcgaggcgaaggcagaaccattagtctgacgctggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacctgtaatcctagcaagtgcgaggcgaaggcagaaccattagtctgacgctggcct 440

                                                                       
Query: 241 gtaagatgctgtctcaaaaacactgaacaatgggaaactccggcctacctgctccggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaagatgctgtctcaaaaacactgaacaatgggaaactccggcctacctgctccggctg 500

                                                                       
Query: 301 caacctctggatcacgtgctgttgctctggctcaggatggctcagatgcctcccccggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacctctggatcacgtgctgttgctctggctcaggatggctcagatgcctcccccggac 560

                                                                       
Query: 361 agatgctgagaacgtgggagccttctcctttggttcaaggacctgcagctgtggcccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgctgagaacgtgggagccttctcctttggttcaaggacctgcagctgtggcccaga 620

                                                                       
Query: 421 tggagctgcagcctcctgaccacaagagggatctttggtttcagtgtagctggcgttgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 tggagctgcagcctcctgaccacaagagggatctttggtttcagtgtagctggtgttgct 680

                               
Query: 481 atctctggagactccagggc 500
           ||||||||||||||||||||
Sbjct: 681 atctctggagactccagggc 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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