BAC Information

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BAC

Clone NameMSMg01-075O20
Chromosome14 (Build37)
Map Location 123,183,428 - 123,183,962
singlet/doubletsinglet
Overlap genePcca
Upstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneBC006662, 4930594M22Rik, Tmtc4, Vgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O20.T7 (MSMg01no075_o20.b1)MSMg01-075O20.TJ (MSMg01no075_o20.g1)
ACCAG298626AG298627
length1,311721
length of high quality
(start - end)
---538 (74 - 611)
definitionCHROMAT_FILE: MSMg01no075_o20.b1 PHD_FILE: MSMg01no075_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:43 2005CHROMAT_FILE: MSMg01no075_o20.g1 PHD_FILE: MSMg01no075_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATGAATAAAAGAAAATCACGCACCCAAATTAACTATCGTTCCCACAT
CATACAAGCNGCGCACTCNCACACGACACCCTATATATACCCATAATATA
TAAGGCTACACCGCGCGCACGCTATAGTTAGATATCTCCACGCGGTGCTG
GCGCTGCGCGTCGTTCTCGCGCACACGGCGCGCTGGTATCGATGTCTGAA
TGTCCCGCCTTCTCTTCTCATCATCTTCCGCGCTTCTATTATATATCCCT
CTCCTTGTTACATCCGCTAGCCTATGTGTTGGATACAGGTTACAATTGCG
CCGTTGCGCTCCGCGCGTCATATGTAGGGACTAATGTTACTGCACGCACG
TAATGTATTGACATATAATAGTGAGTATCGTACAATCGCCGCCCGCCGAC
CAATCTAATAATTCTCACATACCCCCACAGCTAAATAGACTATTATTTCT
GTGCCCGGATGATAGTTGAAAGCCACGGCGCGGCATATCACACGTTGCGC
AATCACATCAGTCCCTGACCGCCGATAACACCGAGTGTTCTATATCTCTC
TATAGTAGACACCACCGCCCACTTGATNCCCCAATCTACTGCGCGTCTCG
GCGTCCTTCAATGTACCATAGTCACACACGCCGCATAGTTCTCTTCGCCC
ACACTTAAACTATATATATACTATTACCTCACCGTCTTGCGGCCGCCATA
TACCAACCGACCTTGATTTGTACACACACACTCATCTTGCGCATCCCACA
TATATAATTATATTTATGGTGTCGCCAGACATCGTGCACTGAGTGTTACA
ATCGACTGATAGGCGTCTCTCTTGCATCCAAGACTACGACGTGACACGCT
CTCATGAAGACGACGCAGGCTGCATTATGCACTCGACGTCATCGCGACTA
ATCACACGCCCACGACCCAATAACCTGAGCGTCTTATTGACTAACGCGTA
TTAGCATATATCTCTCNTCTTCGCCTCGCAGTCTCACCCGCCTCATCGAC
GTNTNTGTACCCCCCGAGCGCGCTCTATCACCGTCATAAATAAGACCGGA
CGTGACGAGCTCGCGCGCGAGCTAGCGGAGCTCATATCTGTAGTATACCA
CGCTCACCCCTGTAATAGATCATTCTCGTCGACTGTACTCTCGTCACGTG
CTGCGCAACGTTGACGGATTTTATATATATGAGTCCATCTGCNAGAGTAT
GCACACGAGCTCAGATAAATCTCTCTCNTCGCCTGTGCTCTTGTCTACCC
GCGAGTCGAAGCTATGCTACCCTCGATGCGCTCGATCTCGCACGAGATGT
GTAGATCTACG
AAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTGAGGAGCTGGGTACATAGAACCC
AACATGGGCTATATGTAGAAAAATCTTGTCAAAGAATAAACAAACGAAAA
CCAAAACAAACAAGAAACAAAACAAAACAGAAAAAGCAAAGAATCCACAT
GACAGTCTATTAAAGGGGCAGGAACTAGTTTTGACTTTCTGTGAAGCAGC
AGAGCTGATCAGCCTGTGCATTTGGTCCTTCAGTTTGTTGGTAGGAACAG
AAGCAAGAGAAGCAATAGATGGAACATCGGCAGTTTTAGCTCAGATTTAC
CTCTGCATAATATTCATTTCCTTAACATAGAATAACATGAGATTTAGAAA
AGTAGGATTTGCATGTGACAAACAAAGCTACAGGGTGAACCAGAAGCATT
TTTTACCATCTATACTATACCTTCCCAAAGTTTTATTATTTGTGGGGTGG
GGCTGGAAAATACTTTGTTTTTGATTTTTACACTGCTAGTGTTGAGTACA
CTTTTTAAAAGCTTAGCAGGTGCAGCTGCATCAGAAGCAACAGTGTTTTT
ACTGTGTCAGGTGGTAATCCTGAGGAAGTACTTTGTATTGCTGCTTTTTA
GTGATAATGTAAGTATTCTCATCAAATGCCATATAAATTTTAGGGTGTGT
GTTTTTCCCCTTTGTGATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o20.g1 MSMg01no075_o20.g1 CHROMAT_FILE:
MSMg01no075_o20.g1 PHD_FILE: MSMg01no075_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:43 2005
         (538 letters)



>mm_chr14_123183228_123184165
          Length = 938

 Score =  965 bits (499), Expect = 0.0
 Identities = 526/535 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgaggagctgggtacatagaacccaacatgggctatatgtagaaaaatcttgtcaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 acctgaggagctgggtacatagaacccaacatgggctatatgtagaaaaaccttgtcaaa 260

                                                                       
Query: 61  gaataaacaaacgaaaaccaaaacaaacaagaaacaaaacaaaacagaaaaagcaaagaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gaataaacaaacgaaaaccaaaacaaacaaaaaacaaaacaaaacagaaaaagcaaagaa 320

                                                                       
Query: 121 tccacatgacagtctattaaaggggcaggaactagttttgactttctgtgaagcagcaga 180
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacatgagagtctatgaaaggggcaggaactagttttgactttctgtgaagcagcaga 380

                                                                       
Query: 181 gctgatcagcctgtgcatttggtccttcagtttgttggtaggaacagaagcaagagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgatcagcctgtgcatttggtccttcagtttgttggtaggaacagaagcaagagaagc 440

                                                                       
Query: 241 aatagatggaacatcggcagttttagctcagatttacctctgcataatattcatttcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatagatggaacatcggcagttttagctcagatttacctctgcataatattcatttcctt 500

                                                                       
Query: 301 aacatagaataacatgagatttagaaaagtaggatttgcatgtgacaaacaaagctacag 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatagaataacatgagatttagagaagtaggatttgcatgtgacaaacaaagctacag 560

                                                                       
Query: 361 ggtgaaccagaagcattttttaccatctatactataccttcccaaagttttattatttgt 420
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgaaccagaagcgtttcttaccatctatactataccttcccaaagttttattatttgt 620

                                                                       
Query: 421 ggggtggggctggaaaatactttgtttttgatttttacactgctagtgttgagtacactt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ggggtggggctggaaaatactttgttttttatttttacactgctagtgttgagtacactt 680

                                                                  
Query: 481 tttaaaagcttagcaggtgcagctgcatcagaagcaacagtgtttttactgtgtc 535
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tttaaaagcttagcaggtgcagctgcatcagaagcaaaagtgtttttactgtgtc 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)