BAC Information

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BAC

Clone NameMSMg01-076F24
Chromosome14 (Build37)
Map Location 106,906,899 - 106,907,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Downstream geneLOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076F24.T7 (MSMg01no076_f24.b1)MSMg01-076F24.TJ (MSMg01no076_f24.g1)
ACCAG298968AG298969
length711716
length of high quality
(start - end)
318 (67 - 384)243 (69 - 311)
definitionCHROMAT_FILE: MSMg01no076_f24.b1 PHD_FILE: MSMg01no076_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:19 2005CHROMAT_FILE: MSMg01no076_f24.g1 PHD_FILE: MSMg01no076_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATCCGCGGAATTCA
ACCCTTTTGCATTCCAGTTCCTGAGGATTCTTGCCCTATTCTGCACCCTG
TGGGTACCTGAGCTAACATGCAAACAGATACACAAATAATTTTGAACAAT
GATAAAAATAACTTACAAATTTACATGTACTATTTCTTATAAAGTTGATT
TAATGAAATTTATTAATTCTGAAATTAATAAAAATACAATTACCGAGATA
TATTGCTGAATATGGTAATTTCAGTTACATGTATCTGCATTCTTCAAAAG
TGTATGTCTCTCTATATGAATAAACAAAAACTAATTGCACAGCATCATGC
ACATTCGCAACAGCTGGAGTGTGTTGATATAACGAATAGAAAATTTACAT
ATGAAATATGTAACCCTTTTTCAGTAAACGAGTCTTTGCTCTGTGGCCAT
CCACCTGACCTATAAAGTCCATACAAACTGATGACCACAGAATATATTGA
TTATAAGCACTTTGAAAATACATTCATAGAAATATCTATACTCCTTTGAG
CAAACAGGGATATCAAACGCTCACCAAGTTGATACCTTAAGTTCATTATC
ACACCGACTATCCAGCTATATCTCGATGCTATACATTGCGCAAAGGATTG
CTACATACCAGGAAAAGAAGTATACATGCTAATAAATGCCCAGCACCTGT
GCTTGTTCTAA
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCAGAAAATCTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
AAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAATCAGTCTGG
CGGTTCCTCAGAATTTTTTTTATAGTACTACCAGAGGATCCAGCAATACC
TCTCCTGGGTATATATCCACGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCACAAGCTGGAA
AGAATCTACATGCCCCTCAACTGAGGAATGCATACTGAATATGTGCCACA
TTTACACAATGTAGCACTACTCAGCTATTATCATGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGCAAT
ACATTTCTCCATTAAACTCACACTTTATCGTACTCTCTGAAACCCGCATC
ATTACTTCTTTTCCTATGACACCCTAGATATCCGATATAATTTGTTTAAC
ACTTGCCCCTCATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_f24.b1 MSMg01no076_f24.b1 CHROMAT_FILE:
MSMg01no076_f24.b1 PHD_FILE: MSMg01no076_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:19 2005
         (318 letters)



>mm_chr14_106906699_106907416
          Length = 718

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcctgaggattcttgccctattctgcaccctgtgggtacctgagctaacatgcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gttcctgaggattcttgccctattctgcaccctgtgggtacctgagctaacatgcaaaca 457

                                                                       
Query: 61  gatacacaaataattttgaacaatgataaaaataacttacaaatttacatgtactatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 456 gatacacaaataattttgaacaatgataaaaataacttacaaatttacatgtagtatttc 397

                                                                       
Query: 121 ttataaagttgatttaatgaaatttattaattctgaaattaataaaaatacaattaccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttataaagttgatttaatgaaatttattaattctgaaattaataaaaatacaattaccga 337

                                                                       
Query: 181 gatatattgctgaatatggtaatttcagttacatgtatctgcattcttcaaaagtgtatg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 336 gatatattgctgaatatggtaatttcagttacatgtatctgtattcttcgaaagtgtatg 277

                                                                       
Query: 241 tctctctatatgaataaacaaaaactaattgcacagcatcatgcacattcgcaacagctg 300
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 276 tctctctatatgaagaaacaaaaactaattgcacagcagcatgcacattcgcaacagctg 217

                           
Query: 301 gagtgtgttgatataa 316
           ||||||||||||||||
Sbjct: 216 gagtgtgttgatataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)