BAC Information

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BAC

Clone NameMSMg01-076H15
Chromosome14 (Build37)
Map Location 86,613,530 - 86,613,960
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603, LOC100043301
Downstream geneEG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H15.T7 (MSMg01no076_h15.b1)MSMg01-076H15.TJ (MSMg01no076_h15.g1)
ACCAG299045AG299046
length690835
length of high quality
(start - end)
434 (69 - 502)161 (134 - 294)
definitionCHROMAT_FILE: MSMg01no076_h15.b1 PHD_FILE: MSMg01no076_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005CHROMAT_FILE: MSMg01no076_h15.g1 PHD_FILE: MSMg01no076_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTCCAAGAAGAGCCGCGGAAT
TCTTAACTTTCAGGAGCATTAACTGGAAATTTGTCTATTTAGGTAAATAA
ATTCTATAGACTTGTAACACAATAATACTAAGACATGCAATAACTACTAC
ACATGAATTAAATTCTAATGGCCAAATAGTTAAGAACTTTGATGATACTC
ATTATTAGTGCTATGGCAACAAATCCCTCTTTGACCTTTAGATTAATAGA
CCATTTTGTTCACAACATGGCTAAAGAGTAGAGTCCATTTGGCACTATTC
TGTTCAATTTATTCTTTTACAATTAATTGCAAGTATAAGATAGTGCTATA
GTATTGCAAACTGTCAGGAGGTGGCGTAATAAGTAGAATCAGTTACAACG
GGTCAACCTACCCCTGTCACAAAGAATTCTGCTTCTCTGAAGTGGATGCC
CACTTTCAAAAGTTCTGACATGACTCCCTCTGTTATTTGACTTTACCTGG
ACGAGAACTGTAAGTCTGTCAAGCCCTTGCTCCCCAACACAAAACAGCTA
TTTTTAAATCATTCAGATAACGGATGAATCTATGCTTACGGAAGCTATCC
TTGTTTCAGTATAGTGTCACAATGCATTCCAGATTAACGAGGTGTCGCCA
CCGATATTTTCGATCTTTGCTAATCAATAAATAGCATCTA
TTTTTTTTTCTTATNNTCTTTTTCTTTTTTAAATTTCTCCTCCTCTCCTT
TATCCTTCTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGAATGGGCTCTAT
GTGAAAAAGGCATAGAATTTAACATACGAAATTATTACTGCTTTCTAATG
CCCTGGTGCCCTTCTCTCTGTCTCTCTGTCTCTCTGTCTGTCTCTCTCTG
TCTGTCTCTCTCTGTCTGTCTCTCTCTGTCTGTGTGTCTGTGGGTGTGTG
TGCGTGAGTGTGTGTGCGTCTGTCCCTCCCCCCACCTCCTACTTTATTTC
CATTATCCCCCCCCCTTCCCTCCTCCCCTTTTCTCTCCATACTTTCCCTC
CTCTTTTTTCCCCCCTCCTCCTTCCCTTCTTTTTTCCTCTTCTCTCCCCT
TATCCTCTTCCTTTCTCCTTCCCCTACTTTCTCCAACCTTTATCTTCCTT
CCATTATTTCCTCCCTTCCCTTTTTCTCCCCTCTTCTCCTTTTATTTTCA
CCTTTTCCCCCCTTTTCCCCCCCCTCACTTCTCTCTTTTTCTATTTTCCT
ACCCTTTTTCCTTATACAACTCTTTCCTTACCCCCTTATTCCCTCACCAA
ATAACCCCATTCCCCTAATTCCAATATCTCCTTCTTTACCTATCCCCCCC
TTTCCCCCCTCCTCCTCCTATTTATCCTATTTCACTTCTCATCCTCTTCA
TACCTTTTTTACTTCCACTCTAACCCCTATCCCCTTACCCCCCACTCTTC
TCCATTGACATCTTTTATTCTTCTCCTATATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h15.b1 MSMg01no076_h15.b1 CHROMAT_FILE:
MSMg01no076_h15.b1 PHD_FILE: MSMg01no076_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:28 2005
         (434 letters)



>mm_chr14_86613330_86614163
          Length = 834

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaactggaaatttgtctatttaggtaaataaattctatagacttgtaacacaataatac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 631 ttaactggaaatttgtctatttaggtaaataaattctatagacttggaacacaataatac 572

                                                                       
Query: 61  taagacatgcaataactactacacatgaattaaattctaatggccaaatagttaagaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taagacatgcaataactactacacatgaattaaattctaatggccaaatagttaagaact 512

                                                                       
Query: 121 ttgatgatactcattattagtgctatggcaacaaatccctctttgacctttagattaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttgatgatactcattattagtgctatggcaacaaatccctctttgacctttagattaata 452

                                                                       
Query: 181 gaccattttgttcacaacatggctaaagagtagagtccatttggcactattctgttcaat 240
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 gaccattttgctcacaacatggctaaagagtagagtccatttggtactattctgttcaat 392

                                                                       
Query: 241 ttattcttttacaattaattgcaagtataagatagtgctatagtattgcaaactgtcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttattcttttacaattaattgcaagtataagatagtgctatagtattgcaaactgtcagg 332

                                                                       
Query: 301 aggtggcgtaataagtagaatcagttacaacgggtcaacctacccctgtcacaaagaatt 360
           |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 331 aggtggtgtaataagtagaatcagttacaatgggtcaacctacccctgtcacaaagtatt 272

                                                                       
Query: 361 ctgcttctctgaagtggatgcccactttcaaaagttctgacatgactccctctgttattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctgcttctctgaagtggatgcccactttcaaaagttctgacatgactccctctgttattt 212

                      
Query: 421 gactttacctg 431
           |||||||||||
Sbjct: 211 gactttacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)