BAC Information

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BAC

Clone NameMSMg01-078G21
Chromosome14 (Build37)
Map Location 113,267,258 - 113,267,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078G21.T7 (MSMg01no078_g21.b1)MSMg01-078G21.TJ (MSMg01no078_g21.g1)
ACCAG299768AG299769
length712720
length of high quality
(start - end)
362 (36 - 397)554 (74 - 627)
definitionCHROMAT_FILE: MSMg01no078_g21.b1 PHD_FILE: MSMg01no078_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:45 2005CHROMAT_FILE: MSMg01no078_g21.g1 PHD_FILE: MSMg01no078_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCAAA
AGAGAATACTTATTTGATCCTTTGATAATTTGTTTTAAAGTACGGTTTCA
AACTATGTAAACATATTCATGATTTTATAGTTCCCTAGACTCTTTCTTTC
CTGTGTTTCAGAGAAGAACAACTTTATGCTGTATAATATTTTGAAAACCA
TCACTGCAGGTGCTAAACTCTAGCATCAGGAGGCAATTTCCTTAACAATT
TCTCTTAAGTTCTATTTCAACTGGCAAGTGGTCTACCTTCCAAGATAATA
CCCAAGAAGGATGCCTCAGTACAGCATATTTCAATACAAGTGAAACACAT
GTTGTGATGCCCATTTTATATGAATTCAAGCACGAATTCTTTCCACAAGT
CCACATGCAATTTTCACTTCCCCATTGTTTAATAATTGTCAAATTATTAA
ACTCTCATGTATTGGGACCCACTCGACCGGCAAGAAAGACGCACCAAACC
GGACTCTTCCATGGTACAAGCTTCATTGCTCACTTCTTCAGGCAGACCCT
GAACCAGGAAAATGGTGCCTCTTTTGTAGTCCTCAGCGTGACGTTTCAGC
CCCTGATATGGCGTGCCTGATCCTGATTTGTTGCTCGCCCATCACCCTAA
TATTACACCCTGACAATGCCAGCGATTTCCAGTGATTTTTTTTTCCTACT
TGCGATCAAGGC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAAAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGCACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTA
AACACATGAAACTCAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_g21.b1 MSMg01no078_g21.b1 CHROMAT_FILE:
MSMg01no078_g21.b1 PHD_FILE: MSMg01no078_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:45 2005
         (362 letters)



>mm_chr14_113267052_113267814
          Length = 763

 Score =  590 bits (305), Expect = e-173
 Identities = 344/357 (96%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaaaagag-aatacttatttgatcctttgataatttgttttaaagtacggtttca 65
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 gaattcaaaagagaaataattatttgatcctttgataatttgttttaaagtacagtttca 504

                                                                       
Query: 66  aactatgtaaacatattcatgattttatagttccctagactctttctttcctgtgtttca 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 aactatgtaaacatattcatgattttatagttccctagactctttctttcctgtgtttta 444

                                                                       
Query: 126 gagaagaacaactttatgctgtataatattttgaaaaccatcactgcaggtgctaaactc 185
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 gagaagaacaactttatgctgtataatattttgagaaccatcactgcaggtgctaaactc 384

                                                                       
Query: 186 tagcatcaggaggcaatttccttaacaatttctcttaagttctatttcaactggcaagtg 245
            ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 aagcatcaggaggcaattaccttaacaatctctcttaagttctatttcaactggcaagtg 324

                                                                       
Query: 246 gtctaccttccaagataatacccaagaaggatgcctcagtacagcatatttcaatacaag 305
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtctaccttccaaggcaatacccaagaaggatgcctcagtacagcatatttcaatacaag 264

                                                                    
Query: 306 tgaaacacatgttgtgatgcccattttatatgaattcaagcacgaattctttccaca 362
           ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct: 263 tgaaacacatgttgtgatgtccattttatatgaattcaagtaggaattctttccaca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space:   266162
Effective search space used:   266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)