BAC Information

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BAC

Clone NameMSMg01-079D03
Chromosome14 (Build37)
Map Location 82,170,468 - 82,170,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079D03.T7 (MSMg01no079_d03.b1)MSMg01-079D03.TJ (MSMg01no079_d03.g1)
ACCAG300336AG300337
length704699
length of high quality
(start - end)
661 (44 - 704)607 (72 - 678)
definitionCHROMAT_FILE: MSMg01no079_d03.b1 PHD_FILE: MSMg01no079_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:45 2005CHROMAT_FILE: MSMg01no079_d03.g1 PHD_FILE: MSMg01no079_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCAGAGCAAGTGAGGGAGCCATCTTGGGTCCTGGATCCCTCAGAGAC
TAGTCTTCACAGGTGGGAATGTGGACCTCAGAAGTAACACAGCTTCTGGG
ACAGGCAGAAGCAACACAGCTTCTGGGACAGAACCCCTTTCAGGCTCCAG
ACATTCTGGGAACTTCCCCACCAGAGGAGAGGTGTTTGCGCAGGAGGGCT
CTGACCACCAAAGCAGGTGAGAAAGCCATCTTGTGTCCCCTGGCCCTCGG
GGACCAGTCTGTGCAGGTGAGCATGCAGAATGCAGAGGCAACATCTCTTC
TGGGACAGGCCCTGTTTCGAGCATTCATCTTCAGCCAGGAGGCAGGTATG
AATGCCAGATATCTGTGCACATTCTCTGCAAGAGGAGAGCTTGCTTGCAG
AGAGTACTGTGACCACTGTGACTGAGGAGAGAGCTAGACTCCCAGGTCTG
CTGACAGAGGCTAACAGAATCACAGGAGGTACAAGCTCCAAACAGAGACA
ACTATAACAACTAACTCCAGAGATTACCAGATGGCAAAATGCAAACTTAA
GAATCATACTAACAGAAACCAAGACAACTCACCATCAGAAGAACCCAGCG
CTCCCACCTCAGCCAGTCCTGGATACTCCACGATGCCAAGAAAGCAAGAC
TCGG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCCCAACCACACACACCACCTCTAACAA
ATCAATATGGAGCATATTTTATTAATAGACAATATTGTCTGTTTTGATCT
CATTAATGGCATTGGTATGCATTTGGTTTTTTTATTTTTAATTTTATGTT
GTTGCATGTATGGAGGGTAGAAGATGATGTGAGGCACCCTGGTGCTGGGG
CTGAACTGTCGCCCACATGAGGGGAGTGCTGGGAACTGAACTATGGCTCC
CTGCAAGAAGCAGGATGTGATTTTAGTTTTTGAACCTTCCTTTAATCCTC
AGTTAAATTTTCAATAGATATACTTGGGTATTTCAAGTAGAAAATACATG
CTAATACTTATTTTCATACCTGGTATAAATAACCGGTAATAACTTGGTTG
GAGTAGTACAATACTGAGAATTTGTTTTAGTACATTCAGATTTTAAATTA
TATGTTTGGGATATTTTAGAGGAGGTGATGACTTTTATAAATAAAGGTCT
TACGTATTCTTTGCAAATTATATTTCATGGGTTAATGGTTTCAAATTGCA
ACAAACTCAAGTTATTTTTTGTCTGACCTAAAACGAGTGACTTCCTACTG
TTACTTTTTCAATTTATTTATATTTAACTCTGCTTTTCTGAACATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_d03.g1 MSMg01no079_d03.g1 CHROMAT_FILE:
MSMg01no079_d03.g1 PHD_FILE: MSMg01no079_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:45 2005
         (607 letters)



>mm_chr14_82169991_82170997
          Length = 1007

 Score =  870 bits (450), Expect = 0.0
 Identities = 505/530 (95%), Gaps = 14/530 (2%)
 Strand = Plus / Minus

                                                                        
Query: 92   tggtatgcatttg--gtttttttatttttaattttatgt-------tgt---tgca--tg 137
            ||||||| |||||   |||||||||||||||||||||||       |||   ||||  ||
Sbjct: 1007 tggtatgtatttgttttttttttatttttaattttatgttggtgcatgtgagtgcagttg 948

                                                                        
Query: 138  tatggagggtagaagatgatgtgaggcaccctggtgctggggctgaactgtcgcccacat 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 947  tatggagggtagaagatgatgtgaggcaccctggtgctggggctgaactgttgcccacat 888

                                                                        
Query: 198  gaggggagtgctgggaactgaactatggctccctgcaagaagcaggatgtgattttagtt 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 887  gaggggagtgctgggaactgaactatggctccctgcaagaagcaggatgtgatcttagtt 828

                                                                        
Query: 258  tttgaaccttcctttaatcctcagttaaattttcaatagatatacttgggtatttcaagt 317
            ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 827  tttgaaccttcttttaatcctcagttaaattttcaattgatatccttgggtatttcaagt 768

                                                                        
Query: 318  agaaaatacatgctaatacttattttcatacctggtataaataaccggtaataacttggt 377
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 767  agaaaatacatgctaatacttattttcatacctggtataaatacccggtaataacttggt 708

                                                                        
Query: 378  tggagtagtacaatactgagaatttgttttagtacattcagattttaaattatatgtttg 437
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  tggagtagcacaatactgagaatttgttttagtacattcagattttaaattatatgtttg 648

                                                                        
Query: 438  ggatattttagaggaggtgatgacttttataaataaaggtcttacgtattctttgcaaat 497
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 647  ggatattttagaggaggtgatgacttttataaataaaggtcttatgtattctttgcaaat 588

                                                                        
Query: 498  tatatttcatgggttaatggtttcaaattgcaacaaactcaagttattttttgtctgacc 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  tatatttcatgggttaatggtttcaaattgcaacaaactcaagttattttttgtctgacc 528

                                                              
Query: 558  taaaacgagtgacttcctactgttactttttcaatttatttatatttaac 607
            ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  taaaatgagtgacttcctactgttactttttcaatttatttatatttaac 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)